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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatttctcttatccttgcttacactggttcgtaattttatgttctatatttactcgcagaaggtctgtcagcttcatactaagtaatgtttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG

Basic information

species Vitis vinifera
transcript Vv01s0026g00350.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110422036|gb|EC988347.1|EC988347
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|110416844|gb|EC982850.1|EC982850
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|110711993|gb|EE089106.1|EE089106
EST:     ATGAACAAGAAATCAACTTTTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|37187728|gb|CF607081.1|CF607081
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCC
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCC
EST: gi|110402919|gb|EC963794.1|EC963794
EST:     CACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: CACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|71866843|gb|DT015898.1|DT015898
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|110702512|gb|EE081308.1|EE081308
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
EST: gi|77581829|gb|DV219868.1|DV219868
EST:     ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCG                         TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
genomic: ATGAACAAGAAATCAACTTCTTGTCTGCATGGCACAACTCAGCAGATTCGgttagtattt ... ttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttactcgcagaaggtctgtcagcttcatactaagtaatgtttcttaacagTATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG
                                          tgtttctt  CT-rich tract
                                   taagtaat  TA-rich tract