1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaataagggtacagatggcacttgttatcttgaggtttattctatgaagtctattatctcaactggagggaactaattgttatttttcattttttgcagTATTAGGAGGGGCCTTCCTTTGGGTTCTTCTGGGACTTGGAGTTTCATGTTTAGTTGGCTTTATTGTTGGGATCATAAGTCGTCCTTATGTAATTCCTCA
species | Vitis vinifera |
transcript | Vv01s0026g00320.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgaagtctattatctcaactggagggaactaattgttatttttcattttttgcagTATTAGGAGGGGCCTTCCTTTGGGTTCTTCTGGGACTTGGAGTTTCATGTTTAGTTGGCTTTATTGTTGGGATCATAAGTCGTCCTTATGTAATTCCTCA
aactaat putative branch site (score: 2)
ttatttttcatttttt putative PPT
aactaattgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaataagggtacagatggcacttgttatcttgaggtttattctatgaagtctattatctcaactggagggaactaattgttatttttcattttttgcagTATTAGGAGGGGCCTTCCTTTGGGTTCTTCTGGGACTTGGAGTTTCATGTTTAGTTGGCTTTATTGTTGGGATCATAAGTCGTCCTTATGTAATTCCTCA
aaaataa
- - - - - - - - - gcacttg
- - - - - - - - - - - - - - - - - - - - - - -tgaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat