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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaagttcgatactatgctggtaggtggaatgcaaaaacatacaatatatatgcttcaactgtccttcatattctgcctagTTTCTTGAAACTTGGAAAAGTTTTCTGTATACAAATTCCTCAGGTTGGGCAGATAAAATTCATGGTCTCACAATTCCTGCTGACGGACTGCACCATGTAC

Basic information

species Vitis vinifera
transcript Vv01s0026g00210.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G01390.1 (Glycine max), 3'ss of exon 3
gtacaaagttcgatactatgctggtaggtggaatgcaaaaacatacaatatatatgcttcaact--gtccttcatattctgcctagTTTCTTGAAACTTGGAAAAGTTTTCTGTATACAAATTCCTCAGGTTGGGCAGATAAAATTCATGGTCTCACAATTCCTGCTGACGGACTGCACCATGTAC-------------------------------------------
                                  | ||   |||    | |  || |||| | |  ||  ||    |  ||  ||     ||||   |        || | | | |     ||| ||||||||||  ||||||||||||||||| ||| |||| ||||| ||||   ||||||| |                                           
----------------------------------gtaattccattatctttgaattcttctattttgtagttatagtattgtataacaagttgatgttctttggtattctttctgtt----ttcttcagGTTGGGTGGATAAAATTCATGGTCTAACAGTTCCGGCTGATGGACCATACCATGTCCAAACTTTGCATGAACCAATTGGTGTAGCAGGGCAGATTGTTCC

upper sequence: Vv01s0026g00210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G23950.1 (Glycine max), 3'ss of exon 4
gtacaaagttcgatactatgctggtaggtggaatgcaaaaacata-caatatatatgcttcaactgtccttcatattctgcctagTTTCTTGAAACTTGGA-----AAAGTTTTCTGTATACAAATTCCT-CAGGTTGGGCAGATAAAATTCATGGTCT-CACAATTC--CTGCTGACGGACTGCACCATGTAC-
      | ||| ||  | |    ||   |  |   |  |   |||  | | ||||         ||| |||   | |      | |||  |  |  ||||      ||| ||  | || ||  | ||||  | | | |  || |  |  | ||   | | ||  |  |   || ||  | |  |||   ||| | 
----gtaattccattatctttgagttcttatatcacgtagttataatattgtataacaagttgatgttctttggacttcattcaattttcttcagGTTGGGCGGATAAAATTCACGGTCTAACAGTTCCAGCTGATGGACCATACCATGTCCAAACTTTGCATGAACCAATTGGTGTAGCAGGGCAGATTGTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatgcaaaaacatacaatatatatgcttcaactgtccttcatattctgcctagTTTCTTGAAACTTGGAAAAGTTTTCTGTATACAAATTCCTCAGGTTGGGCAGATAAAATTCATGGTCTCACAATTCCTGCTGACGGACTGCACCATGTAC
                                             ttctgcct  CT-rich tract
       aaaaacatacaatata  TA-rich tract