Sequence
atgc intronic sequence ATGC exonic sequence...agttgcatgaattgtcacatttattggtatttcatttaattgattatctggtttaagtttgagctctccttttttgtattggattcacatttcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G39720.1 (Glycine max), 3'ss of exon 2
agttgcatgaattgtcacatttattggtatttcatttaattgattatctgg--tttaagtttgagctctccttttttgt---attggattcacatttcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
| |||| | | || | | | |||| | | |||| ||| || |||| | ||| | ||| ||| ||| | ||||||||||||||||| |||||||||||||| |||||||| |||||| | | |||||| || || ||||| || ||||| || ||||| ||||||| ||| ||||
-----cgataattatagtgatgctttttttcttttttattaaaaaatctaaaattttgagatgtcctcttatatttcatcttgttgcatttacacattgcaccagGTTCCCCAACAGAAGAATGACTATGACTGTGGTCTTTTTGTATTGTACTTCATTGAACGTTTCATGGAGGAGGCACCGGAAAGACTGAAAATGAAAGATT
upper sequence: Vv01s0026g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G18950.1 (Glycine max), 3'ss of exon 5
agttgcatgaattgtcacatttattggtatttcatttaattgattatctggtttaagtt-tgagctctcc--------ttttttgtattggattcacatttcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
| | | | |||| || | || ||| || || || | || || |||| | ||| || | | ||| ||| | | ||||||||||||||||| |||||||| ||||| |||||||| |||||| | | |||||| || || ||||| || ||||| |||||||| ||||||| ||| ||||
-------tttttcgataattttagtgatgcctctttt--ttaataataaatctaaaattgtgagatgtccactaatatttcatcctgttgcatttgcccattgcaccagGTTCCCCAACAGAAGAATGAATATGACTGTGGTCTTTTTGTATTGTACTTCATTGAACGTTTCATGGAGGAGGCACCTGAAAGACTGAAAAGGAAAGATT
upper sequence: Vv01s0026g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G60220.1 (Arabidopsis thaliana), 3'ss of exon 12
---------------------------------agttgcatgaattgtcacatttatt--ggtatttcatttaattgattatctggtttaagtttgagctc--tccttttttgtattggattcacatt-tcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
|| | | || | ||| || | || | ||| ||| | || | | || || | | | || || |||| | || | | |||||||||| || || || || || | ||||||||||| ||||| || |||||||| | ||||||||||||||||| ||| |||||||||||| ||| ||
gtcagtcttttaccttcttaatcccatgattcaaggaactttgtttatacggtttcttcggaaatatgattatattcagacactagaaccacaggaagttcaattcgtcttatgatattattctctttgtgcaaccagGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCATTAAACGGTTCATTGAAGAGGCGCCTCAAAGGCTGAAAAGGAAAGACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctggtttaagtttgagctctccttttttgtattggattcacatttcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
tttcccacc CT-rich tract
ttttttgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttgcatgaattgtcacatttattggtatttcatttaattgattatctggtttaagtttgagctctccttttttgtattggattcacatttcccaccagGTTCCCCAACAAAAGAATGACTATGATTGTGGTCTCTTTGTACTTTTCTTCATGGAGCGGTTCATTGAAGAGGCCCCTGAAAGGCTGAAAAAGAAGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - gcatgaa