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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT

Basic information

species Vitis vinifera
transcript Vv01s0011g06630.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G36870.1 (Glycine max), 3'ss of exon 1
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttat-tatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
                                  |||| | || ||||  ||||| ||    |||| | || |   || | | | ||    | | | ||   |||||| |  | ||||| | || |       |    ||||||||||| |  ||| | || || ||||||||||||||| | ||||||||||| |||||||||||||| ||||| || ||||||||||||
--------------------------------gtattattctt-tctcttcctctttaatgtttatctctcatcccttctttctattttcacctaaccactctttttcttttt-ttgttctgtttt-------ttctctagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACAGAACGCCCAGTCAATGCAGTTACCATGTCACCTCTTCTTGATCAT

upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G36870.3 (Glycine max), 3'ss of exon 1
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttat-tatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT----
                                  |||| | || ||||  ||||| ||    |||| | || |   || | | | ||    | | | ||   |||||| |  | ||||| | || |       |    ||||||||||| |  ||| | || || ||||||||||||||| | ||||||||||| |||||||||||||| ||||| || ||||||||||||    
--------------------------------gtattattctt-tctcttcctctttaatgtttatctctcatcccttctttctattttcacctaaccactctttttcttttt-ttgttctgtttt-------ttctctagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACAGAACGCCCAGTCAATGCAGTTACCATGTCACCTCTTCTTGATCATGTAT

upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G00510.1 (Glycine max), 3'ss of exon 1
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgat-gttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
                                          |||     | ||| | |||||| || | |  |||  ||          ||||||    ||||  ||| |    | || | ||||       |    ||||||||||| |  ||| | || || ||||||||||||||| | || |||||||| |||||||||||||| ||||| || ||||||||||||
-----------------------------------------gtattctttcttctctcccactt-ttctttccattcatcc---------cttcattttattttcacctaaccactcttgttttgttct----ttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGCCCTGTCAATGCAGTTACGATGTCACCTCTTCTTGATCAT

upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G03610.2 (Glycine max), 3'ss of exon 4
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
                           | ||  | ||   |||  || |     | | ||  | ||| || |  || |  | | ||    | | |     |||| | ||  |  | |||| |  |  |    |   |||||||||||| |  || || || || ||||||||||| ||| | |||||||| ||||||||||||||| ||||||| || || |||||||||
--------------------------gtatgaactttttgtttccctgatttctttttccgttaattctcatgtttgtcttttctt----catgacttgattttattctcctaatattttttgtttaaatttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053113|gb|FQ455570.1|FQ455570
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351045922|gb|FQ441305.1|FQ441305
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351037979|gb|FQ465217.1|FQ465217
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351049149|gb|FQ449871.1|FQ449871
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGGACAGCAGGACGTTAACACTTATCAAGACCTGTCTAACAGAACG
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGG-ACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACG
EST: gi|351048997|gb|FQ449840.1|FQ449840
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTGTCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351039814|gb|FQ464852.1|FQ464852
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|29783544|gb|CB349778.2|CB349778
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351035651|gb|FQ463496.1|FQ463496
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351025059|gb|FQ433476.1|FQ433476
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|349811971|gb|FQ410768.1|FQ410768
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTTACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351036544|gb|FQ457257.1|FQ457257
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|110697326|gb|EE074214.1|EE074214
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|110380898|gb|EC946200.1|EC946200
EST:     TTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: TTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351055042|gb|FQ440381.1|FQ440381
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTNACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351012497|gb|FQ430061.1|FQ430061
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351040625|gb|FQ438169.1|FQ438169
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351048235|gb|FQ442205.1|FQ442205
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTNACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|110411322|gb|EC977030.1|EC977030
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351015244|gb|FQ445528.1|FQ445528
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAAAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|349831103|gb|FQ420773.1|FQ420773
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAA                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|110369193|gb|EC933345.1|EC933345
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351029364|gb|FQ436758.1|FQ436758
EST:     TGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCCTAAC                         CTT-GGGACAGCA
genomic: TGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGC-TAAGgtagcataac ... aatctcttagCTTTGGGACAGCA
EST: gi|349810075|gb|FQ401521.1|FQ401521
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351012844|gb|FQ430407.1|FQ430407
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351053994|gb|FQ441760.1|FQ441760
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
EST: gi|351055014|gb|FQ440353.1|FQ440353
EST:     CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAG                         CTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC
genomic: CTGTAGATGGTTCACATTTTGTTACTGGCTCCCTGGATAAATCTGCTAAGgtagcataac ... aatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
                    tcctgat  putative branch site (score: 3)
                                               tctctt  putative PPT
            aagtttttt  TA-rich tract