Sequence
atgc intronic sequence ATGC exonic sequence...tgctgctttgtcttagttaatcttctgctgttgattatagttatttgtacttttctttatgccaagttgtttactgacaattgctgaattataagatcagACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05880.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G26900.1 (Glycine max), 3'ss of exon 4
-tgctgctttgtcttagttaatcttctgctgttgattatagttatttgtac-ttttctttatgccaagttgtttactgacaattgctgaattataagatcagACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATG
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ctaagtctttctttcggtcaatataccatggcaaagcgatggaagagttacatttttaatatgt-gtgatgttttctgattacatttgattcttcatgt-agACCACATCCTAATGAATGTTCAGGAAGTGACTTAGATGGAGATATCTACTTTGTCAGTTGGGACCCTGATCTTATTCCTCCTCATCAGGAAAATCCCATG
upper sequence: Vv01s0011g05880.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G14790.1 (Arabidopsis thaliana), 3'ss of exon 2
-tgctgctttgtcttagttaatcttctgctgttgattatagttatttgtacttttctttatgccaagttgtttactgacaa-ttgctgaattataagatcagACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATG
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gtaaacatttttctatgcttgattcgtgttttt--ttcgagctttt---attgttttaagtctcgaacttttcattggaatcttgtgttcttttgtgcatagGCCACACCCAAATGAATGTTCTGGGAGTGATTTAGATGGAGATATTTACTTTGTATGTTGGGATCAAGAATTGGTTCCGCCAAGAACGTCTGAACCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtacttttctttatgccaagttgtttactgacaattgctgaattataagatcagACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATG
tactgac putative branch site (score: 1)
aattataagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctgctttgtcttagttaatcttctgctgttgattatagttatttgtacttttctttatgccaagttgtttactgacaattgctgaattataagatcagACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATG
- -tgctttg
- - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa