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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttccctcttctccacctctttctttttgccacccgaaattttcattttaaggcccaagtttttgctcagggactattggactattatataatttttttccgttgttttaatgataataccacacatcgcgtaaaaggagtgcttcctacttcacatatgtaagtgtttgattgtgtcattgatagGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGCTATCACATACATTGTATTAGACAGTGGCTCCTGCGGAAAAATGCTTGTG

Basic information

species Vitis vinifera
transcript Vv01s0011g04080.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372745|gb|EC936933.1|EC936933
EST:     TCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAA                         GAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGC
genomic: TCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAAgtgagtttcc ... tcattgatagGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGC
EST: gi|110421352|gb|EC987648.1|EC987648
EST:     TCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAA                         GAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGC
genomic: TCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAAgtgagtttcc ... tcattgatagGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaggagtgcttcctacttcacatatgtaagtgtttgattgtgtcattgatagGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGCTATCACATACATTGTATTAGACAGTGGCTCCTGCGGAAAAATGCTTGTG
                                  gtttgat  putative branch site (score: 5)
                        atatgtaa  TA-rich tract