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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtctccctacaatggcatacaatgaatgaatcactagcgattatgaagacccttttcagattttactaatttcatgaaacatttctcattgcttaattagtactaacctattctagcttctcctcagGAATCCTCCCGATGTCGACAAGTTTACATTATCTGAGCACACGGTTCGATCATTTCACTCAAAAATCAATACGGTGTTGTCAACCTTCTATCGTGTTTCA

Basic information

species Vitis vinifera
transcript Vv01s0011g04030.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690619|gb|EC955081.1|EC955081
EST:     CTGATGCTTGCCATTTTCATTTGGTCTAATGGGGCAGGATACATAAATTG                         GAATCCTCCCGATGTCGACAAGTTTACATTATCTGAGCACACGGTTCGATC
genomic: CTGATGCTTGCCATTTTCATTTGGTCTAATGGGGCAGGATACATAAATTGgtaatgtctc ... ttctcctcagGAATCCTCCCGATGTCGACAAGTTTACATTATCTGAGCACACGGTTCGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgaaacatttctcattgcttaattagtactaacctattctagcttctcctcagGAATCCTCCCGATGTCGACAAGTTTACATTATCTGAGCACACGGTTCGATCATTTCACTCAAAAATCAATACGGTGTTGTCAACCTTCTATCGTGTTTCA
                            tactaac  putative branch site (score: 0)
                                      ttctagcttctcctc  putative PPT
                    ttaattagtactaa  TA-rich tract