1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgtctagattggatcacaatatttaatggtagcatcttggtttctgagattttcaattttttttttaatttttttttttttgcggggcctcttattgcagGCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATCTGCTTCAGCTCAGTAGATGGTGAGAATGCACCATCAGGAGAGAGTTTTA
species | Vitis vinifera |
transcript | Vv01s0011g03500.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGATCTGTTGGCCTTTGAGACCATTCCTAATAAACTTGAAGCTCAA GCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATCEST: gi|45770242|gb|CN006094.1|CN006094
genomic: GTCCAGATCTGTTGGCCTTTGAGACCATTCCTAATAAACTTGAAGCTCAGgtttgctcct ... cttattgcagGCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATC
EST: GTCCAGATCTGTT-GCCTTCGAGACCATTCCTAATAAA-TTGAAGCTCAG GCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATC
genomic: GTCCAGATCTGTTGGCCTTTGAGACCATTCCTAATAAACTTGAAGCTCAGgtttgctcct ... cttattgcagGCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATC
gagattttcaattttttttttaatttttttttttttgcggggcctcttattgcagGCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATCTGCTTCAGCTCAGTAGATGGTGAGAATGCACCATCAGGAGAGAGTTTTA
ttttaat putative branch site (score: 3)
cctcttatt putative PPT
tttcaatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtctagattggatcacaatatttaatggtagcatcttggtttctgagattttcaattttttttttaatttttttttttttgcggggcctcttattgcagGCTTGTGTTGAGTTGCTTGAAGAGGAAAATGTGCAAATTCCATCTTGGATCTGCTTCAGCTCAGTAGATGGTGAGAATGCACCATCAGGAGAGAGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - cacaata