1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttgcaaagccaggactttcacctctattagttcataagattcttctgcccttttgggcatgtgtgagctttttctcaaaatttggaatgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAGATGGATTCTTCAGTGTTAAAAGTAAAATGCTG
species | Vitis vinifera |
transcript | Vv01s0011g03380.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTTTGCCTCCTGGTCCG GGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAEST: gi|110399056|gb|EC965543.1|EC965543
genomic: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAGgtgagttgca ... atgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAA
EST: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAG GGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAEST: gi|26259444|gb|CA810507.1|CA810507
genomic: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAGgtgagttgca ... atgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAA
EST: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAG GGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAEST: gi|77583069|gb|DV220571.1|DV220571
genomic: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAGgtgagttgca ... atgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAA
EST: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAG GGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAA
genomic: TGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAGgtgagttgca ... atgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAA
cttctgcccttttgggcatgtgtgagctttttctcaaaatttggaatgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAGATGGATTCTTCAGTGTTAAAAGTAAAATGCTG
tttttctcaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgcaaagccaggactttcacctctattagttcataagattcttctgcccttttgggcatgtgtgagctttttctcaaaatttggaatgatgtcagGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAGATGGATTCTTCAGTGTTAAAAGTAAAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG