1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaagcatatgtcctctttacattttcaaacaagcatgcagtgcaaaaaaaaatactgatatctttctccatgtctgtttttcactttttcctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGATTGATTGCCAAAATATCCTAAAGGCAGAAAATCGTGTTGATGAAGTCT
species | Vitis vinifera |
transcript | Vv01s0011g02990.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAG CAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGEST: gi|34545444|gb|CF513676.1|CF513676
genomic: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAGgtaaaaataa ... cctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAG
EST: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAG CAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGEST: gi|110694266|gb|EE071224.1|EE071224
genomic: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAGgtaaaaataa ... cctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAG
EST: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAG CAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGEST: gi|34543200|gb|CF511432.1|CF511432
genomic: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAGgtaaaaataa ... cctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAG
EST: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAG CAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAG
genomic: TTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAGgtaaaaataa ... cctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAG
aaaaaaaatactgatatctttctccatgtctgtttttcactttttcctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGATTGATTGCCAAAATATCCTAAAGGCAGAAAATCGTGTTGATGAAGTCT
tactgat putative branch site (score: 2)
tctttctccatgtctg CT-rich tract
atatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaagcatatgtcctctttacattttcaaacaagcatgcagtgcaaaaaaaaatactgatatctttctccatgtctgtttttcactttttcctacttaagCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGATTGATTGCCAAAATATCCTAAAGGCAGAAAATCGTGTTGATGAAGTCT
ccaagca
- - - - -tgtcctc
- - - - - - - - - - - - - caaacaa
- - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - aaaaaaa