Sequence
atgc intronic sequence ATGC exonic sequence...caataatacagttgccatacgcaagtcattttgtttatagtttagttgactgtgtaataaatttcaattttagttttatttttgcttttatttattgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G05390.2 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------caataatacagttgccatacgcaagtcattttgtttatagtttagttgactgtgtaataaatttcaattttagttttatttttgcttttatttatt---gtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC
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gtaaccttacattttccctcctttgaacaattgagtttgtgactgatttcgtcttttaaaacagcaggagagtttttgataaaattgataaacttagcac-tgaaatttagttcttctctcgttagatcaa-tgtttaatcctatgtgattttcatttccttctcactcttggttacttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTAC
upper sequence: Vv01s0011g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G34280.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------caataatacagttgccatacgcaagtcattttgtttatagtttagttgactgtgtaataaattt--caattttagttttatttttgcttttatttat---tgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC
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gtaaccttacatttttcctcctttgaacaattgtgactgcttccattattcaaaacagctggagtgtttttgatgaaattgataaacttagcac-tgaaatttagtttttctccctttagattaatcctatg-tggttttggtgattttcatttccttctcactcttggttacttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCC
upper sequence: Vv01s0011g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G30970.2 (Arabidopsis thaliana), 3'ss of exon 4
caataatacagttgcca-tacgcaagtcattttgtttatagtttagttgactgtgtaataaatttcaattttagttttatttttgcttttatttattgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC------
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-----gttcaatcccaagttcgtagaatcattgacttacatttggtttagctgttttgta---tcaaattgtaatatctttttcatgttttgttgccgtagGTGGG------ACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgactgtgtaataaatttcaattttagttttatttttgcttttatttattgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC
agttgac putative branch site (score: 4)
tttttgcttttattt putative PPT
taataaatttcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caataatacagttgccatacgcaagtcattttgtttatagtttagttgactgtgtaataaatttcaattttagttttatttttgcttttatttattgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC
- - aatacag
- - - - - - -gccatac
- - - - - - - - - - - - - - - - - - - - - - - tgactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaat