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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcagTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTAT

Basic information

species Vitis vinifera
transcript Vv01s0011g01060.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G09970.1 (Glycine max), 3'ss of exon 5
gtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggattta-tgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcagTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTAT
                                                                                    |   |||  |  || | |     | |||| |  ||  | ||| | ||| || || | ||||  ||  |  ||    ||   |  | |||| |    ||||  ||||||||| ||||| || || |  || ||    ||||| | ||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||| || || 
-----------------------------------------------------------------------------------ctgcaatacctatatctataggtgctttttatggtttcacttgaacttaatgcttcttttatttctagttggtttgaatcattccattgtttt----gtta--cagTGAGGAGGAACTGGAAGAACATTTCAGTCGCTTTGGAAGTGTCTCACAGGTTCATCTAGTTGTTAATAAAGATACAAAGCGATCCAAAGGAATAGCATAC

upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G24510.1 (Glycine max), 3'ss of exon 2
gtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcagTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTAT
                                                                                        |||  |  || | |     | |||| |   |  | ||| | |||    | | || | | ||||      || ||      ||    ||| | |  | ||||||||| ||||| || || |  || ||    ||||| | ||| |||||||||||| | |||||  ||||||||||||||||||| || ||||| || |||
-------------------------------------------------------------------------------------tcaatacctatatctataggtgctttttatggattcacttgaacttaatgctgtttttttatttctag---ttggtttgaatcattccattgttttgttacagTGAGGAGGAACTGGAAGAACATTTCAGTCGCTTTGGAAGTGTCTCACAGGTTCATTTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcagTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTAT
       ttataactt  TA-rich tract