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...gcataaagaagctattcctgccatccatggttgcaccctgttctcaacttcatcatccacttagctgaactgaattggactgttcaatatctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCAGTTGCAATTGACTTTACAGCTAACCATCCAGAAGCT
species | Vitis vinifera |
transcript | Vv01s0011g00550.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|351014788|gb|FQ437988.1|FQ437988
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|110361486|gb|EC924960.1|EC924960
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTCGGACCAAGCCTTEST: gi|110361507|gb|EC924986.1|EC924986
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTCGGACCAAGCCTTEST: gi|349808731|gb|FQ406581.1|FQ406581
genomic: AGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|352786080|gb|FQ481875.1|FQ481875
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|351042817|gb|FQ434379.1|FQ434379
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAT CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACTCA-GCCTEST: gi|351054615|gb|FQ456812.1|FQ456812
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGAC-CAAGCCT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|349829486|gb|FQ420018.1|FQ420018
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTEST: gi|349830592|gb|FQ416890.1|FQ416890
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
aacttcatcatccacttagctgaactgaattggactgttcaatatctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCAGTTGCAATTGACTTTACAGCTAACCATCCAGAAGCT
atctaac putative branch site (score: 2)
aatatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataaagaagctattcctgccatccatggttgcaccctgttctcaacttcatcatccacttagctgaactgaattggactgttcaatatctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCAGTTGCAATTGACTTTACAGCTAACCATCCAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- -taaagaa
- - - - - - - - - - ccatcca
- - - - - - - - - - - - - - - -tgcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactta