1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaagtatatcaaaatattaaaatgtagagaaatggtgagtttttatttttattatagtctggtcgatgtttttgttgctgaatttcctattctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTGATTGTGATGGCTCGAAGTCGAGCTTGACGCCCAGATAGATCAGTAGATA
species | Vitis vinifera |
transcript | Vv01s0010g02580.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGAAAGCAGACCACTGCGGGAACTTCTTGGCCACACCCCTCCTCAG GTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTGEST: gi|110368792|gb|EC932867.1|EC932867
genomic: TGGCTGAAAGCATACCACTGCGGGAACTTCTTGGCCACACTCCTCCTCAGgtttggtcat ... tctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTG
EST: TGGCTGAAAGCAGACCACTGCGGGAACTTCTTGGCCACACCCCTCCTCAG GTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTGEST: gi|110388647|gb|EC953420.1|EC953420
genomic: TGGCTGAAAGCATACCACTGCGGGAACTTCTTGGCCACACTCCTCCTCAGgtttggtcat ... tctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTG
EST: TGGCTGAAAGCAGACCACTGCGGGAACTTCTTGGCCACACCCCTCCTCAG GTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTG
genomic: TGGCTGAAAGCATACCACTGCGGGAACTTCTTGGCCACACTCCTCCTCAGgtttggtcat ... tctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTG
tttttattatagtctggtcgatgtttttgttgctgaatttcctattctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTGATTGTGATGGCTCGAAGTCGAGCTTGACGCCCAGATAGATCAGTAGATA
tttcctattct CT-rich tract
attatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtatatcaaaatattaaaatgtagagaaatggtgagtttttatttttattatagtctggtcgatgtttttgttgctgaatttcctattctggtgcagGTTATTGCTGGTGCAGTGCTGGGACTTACCACAGCATCTATTGCCTATTTGATTGTGATGGCTCGAAGTCGAGCTTGACGCCCAGATAGATCAGTAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -caaaata
- - - - - - - - -taaaatg
- - - - - - - - - - - - -agagaaa
- - - - - - - - - - - - - - - - tggtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct