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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaaatttagcgtgcttattttgccttgtccactgtttacttaaaaacttttttgttttccttctaaaatttggttttctatttgttttttcaattcactcaatatcctttttcttttggctttcttaaattagGTTTCTAAAGAAGCTGGATTTGGAAGAAGTTTATTTGAAAGGTTGAGTTCATTAGGTCATTTTAAGCACCTTCTCAATGTGCAGTACAGAATGCATCCAT

Basic information

species Vitis vinifera
transcript Vv01s0010g01830.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os04g49310.1 (Oryza sativa), 3'ss of exon 2
gtgagaaaatttagcgtgcttattttgccttgtccactgtttacttaaaaacttttttgttttccttctaaaatttggttttctatttgttttttcaattcactcaatatcctttttcttttggctttcttaaattagGTTTCTAAAGAAGCTGGATTTGGAAGAAGTTTATTTGAAAGGTTGAGTTCATTAGGTCATTTTAAGCACCTTCTCAATGTGCAGTACAGAATGCATCCAT
                              |   ||||||| | |  | |    ||| |||   ||| |     ||  ||||||| |||   |  ||||||| |  | ||   || |  ||  |           ||| |  || |  | |||   |||||| ||||| | ||||| ||| | ||||  || ||  |   |||||||||||||||||| || ||||| ||||||||| 
-----------------------------gtaagcactgttgattccata----tttcgttactctttt----ctttattttctacttggaat--caattcatt-gacatgtattatgattctg-----------tagATAGCTGACAATGCTTTCTTTGGACGAAGTGTTTTTGAGAGGCTAAGTTTGTTGGGCTACAGTAAGCACCTTCTCAATGTCCAATACAGGATGCATCCAG

upper sequence: Vv01s0010g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G303118_T01 (Zea mays), 3'ss of exon 7
gtgagaaaatttagcgtgcttattttgccttgtccactgtttacttaaaaacttttttgttttccttctaaaatttggttttctatttgttttttcaattcactcaatatcctttttcttttggctttcttaaattagGTTTCTAAAGAAGCTGGATTTGGAAGAAGTTTATTTGAAAGGTTGAGTTCATTAGGTCATTTTAAGCACCTTCTCAATGTGCAGTACAGAATGCATCCAT
                                                            |   || || ||||||    ||||  || | || |   |    |  | ||    | |  ||  ||           || | ||| |    |||   |||||| ||||| | ||||| |||||||||||  ||||  ||  |||||||||||||||| | |||||||| ||||||||| 
-----------------------------------------------------------gtaagctccttaaatttatacttctgcttatgttctttgta---ttgacatgtaatatggttctgc-----------agATATCTGATAGTGCTAACTTTGGACGAAGTGTTTTTGAGAGGTTGAGTTCCCTAGGCTATAGTAAGCACCTTCTCAATATCCAGTACAGGATGCATCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgttttttcaattcactcaatatcctttttcttttggctttcttaaattagGTTTCTAAAGAAGCTGGATTTGGAAGAAGTTTATTTGAAAGGTTGAGTTCATTAGGTCATTTTAAGCACCTTCTCAATGTGCAGTACAGAATGCATCCAT
                        tatcctttttcttttg  CT-rich tract
                                          tttcttaaatta  TA-rich tract