Sequence
atgc intronic sequence ATGC exonic sequence...taagatccttaaatatccttttaatatgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G36370.1 (Glycine max), 3'ss of exon 4
taagatccttaaatatccttttaat--atgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
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--aaatttaaacaattcaatttgaggagtaacactagagctgtccttcgttcatacttcattgtgttcctctgttcaattgttttacttctctttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATG
upper sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G12080.1 (Glycine max), 3'ss of exon 4
taagatccttaaatatccttttaat--atgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
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--aaattttaacaattcagtttgaggagtaacactagagctgtccttcattcatatttcatttcctctgttcaattgttttactttcttctctttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTACTGCTTGCTTGTTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
tcttgat putative branch site (score: 4)
tctcccaaccaccatt CT-rich tract
aaatttctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taagatccttaaatatccttttaatatgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
- - - - - - - - - - - - - -gacaaag
- - - - - - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctccca