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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttgttggaattaataacttggggaccataattagattgaattatctatggaattcgatgttgcttccgtggctcattccatgggaattgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG

Basic information

species Vitis vinifera
transcript Vv01s0010g00740.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G13860.1 (Glycine max), 3'ss of exon 5
gttggtttgttggaattaataacttggggaccataattagattgaattatc-tatggaattcgatgttgcttccgtggctcattccatgggaat-tgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG
  ||| || |   | ||   |||| |   |   | | ||  |   ||| |  | ||   || | | |  ||||| |    ||||   |   | |    |  ||  || ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |||||||||
-gtggcttct--aagtttgaaactagaaaat--ttactatgtcatattgttatttgtgtttaggtatcacttccttttaacattgtttattattactttctatgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG

upper sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G09400.1 (Glycine max), 3'ss of exon 4
gttggtttgttggaattaataacttggggaccataattagattgaattatc-tatggaattcgatgttgcttccgtggctcatt-ccatgggaattgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG
    ||   ||  || |   |||   |  |   | | ||  |   ||| |  | ||   ||   | |  | ||| |    ||||   ||    | |   | ||  || ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |||||||||
----gtggcttctaagtttgaacccagaaaat-tcactatgtcatattgttatttgtgtttatgtatcacatccttttaacattgttatttttactttct-atgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG

upper sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G26260.1 (Arabidopsis thaliana), 3'ss of exon 3
gttggtttgttggaattaataacttggggaccataattagattgaattatctatggaattcgatgttgcttccgtggctcattccatgggaattgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG
||  ||   ||    || | |  |||  | | | |  ||||   |        |||||   || | || || | |  |  ||     ||  ||||| |   || ||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| | ||  | |||
gtaagtccttttctttttagatgttgatgtctacatgtagaagaa--------tggaagctgaagctgttttcttttcatataaatgggacattgcatttattgtgtagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaattcgatgttgcttccgtggctcattccatgggaattgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG
                                        gcttgat  putative branch site (score: 5)
                                              tttttgt  CT-rich tract
                                          ttgattttt  TA-rich tract