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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcatcctcacacccttcttgctaatgctaggaaagaactactcagttgactcatttttgtgtctgggccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGGACTCTTTTGATTCTTGATGAGATAAATGCTACTCTGTTACCTCTCAGTG

Basic information

species Vitis vinifera
transcript Vv01s0010g00580.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00580.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G01340.1 (Glycine max), 3'ss of exon 4
gtggcatcctcacacccttcttgctaatgctaggaaagaactactcagttgactcatttttgtgtctgggc-cttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGGACTCTTTTGATTCTTGATGAGATAAATGCTACTCTGTTACCTCTCAGTG
||    | | |||||  | ||| ||  || || ||   || ||||    |     | | |||||| |  ||  || |||| | || || |||||||||||||||||| | | |  |||||| |||| ||| ||||||||||  ||||||||||||||    ||  || |||| || ||||
gtatacttcacacacattacttcct--tgttaagatc-aattacttttctctgaaagtcttgtgtgtttgcattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAACTCTTTTGAAGCTTGATGAGATAAACAAAACATTGCTACCACTTAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791438|gb|FQ481017.1|FQ481017
EST:     AATTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAAAATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
EST: gi|110361414|gb|EC924882.1|EC924882
EST:     AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
EST: gi|26257414|gb|CA808477.1|CA808477
EST:     AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
EST: gi|349830142|gb|FQ420402.1|FQ420402
EST:     AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
EST: gi|110363854|gb|EC927477.1|EC927477
EST:     AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
EST: gi|26257309|gb|CA808372.1|CA808372
EST:     AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGG                         GTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG
genomic: AACTGCAAGGGACTGATTTTTGGAAGCTAAGACGAGCATACTCTCCTGGGgtggcatcct ... gccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgctaggaaagaactactcagttgactcatttttgtgtctgggccttcgcagGTGCAAGAATATGTTGAAGCTGCTACACTATGTAATTTCTGCAAAAATGGGACTCTTTTGATTCTTGATGAGATAAATGCTACTCTGTTACCTCTCAGTG
                                              ccttcgc  CT-rich tract
                             tcattttt  TA-rich tract