Sequence
atgc intronic sequence ATGC exonic sequence...tattttcttgaaacaacatgccatttataatgtagttttagtggaactaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G06630.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------tattttcttgaaacaacatgcca-tttataatgtagttttagtggaactaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
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gttaatatgtgccaaatgtcatcttctttccagtactttgttggccatttgttaccctgaaggaaaaagacaacccttaaactgaagccgttaatttttattttaaaagaagccattgactttttggcatttgctctctctcattatcagGTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAATCGCGGAATGGAGAAAACTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGA
upper sequence: Vv01s0010g00520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G12560.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------tattttcttgaaacaacatgcca-tttataatgtagttttagtggaactaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
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gttaatatgtgccaaatgtcatcttctttccagtactttgttagccatttgttaacctgaaggaaaaagacaacccttaaaactaaagccattatttttattttaaaagaagccattgactttttggcatttgctctctctcattatcagGTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAAACTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGA
upper sequence: Vv01s0010g00520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G69380.1 (Arabidopsis thaliana), 3'ss of exon 4
tattttcttgaaacaacatgccatttataatgtagttttagtggaactaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
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------------gtaacttgttccttctca-gtgttgtcaattgatacaagt----atatggttaa-atttgagatttgtatt---------tatctcagGTTAACAAGTTGGTGGAAGAGTTTGCTGATATAAACCGTTCAATGGCGAAAACCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
tattaat putative branch site (score: 2)
ttaatattctcccttt CT-rich tract
attcgaatttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattttcttgaaacaacatgccatttataatgtagttttagtggaactaaattcgaatttttttaataatcaatattaatattctccctttctccctcagATTGATGGTATGGTTGAAGAATTTACAGATATAAATCGTGGAATGGAGAAAACTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - -gaaacaa
- - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - aactaaa