Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacatacttctcccatgtcatcaatataatatctgaaaaatatgtatgagaactaattgagttgctgcccttttccagGGATGCAAAGTAGTCTTCTGGCTCTTGCACTTGCAAATAGGTTTTTCCAAGATTCACTTGTGGGAGTGCCTCCAGCAATCTCTGTAAGTCTATAA

Basic information

species Vitis vinifera
transcript Vv00s2117g00010.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706596|gb|FC057214.1|FC057214
EST:     TGACGCACCTGATGTAAAAGCACTCCAAAGGACACTATCATTTGAGACAG                         GGATGCAAAGTAGTCTTCTGGCTCTTGCACTTGCAAATAGGTTTTTCCAAG
genomic: TGAGGCACCTGATGTAAAAGCACTCCAAAGGACACTATCATTTGAGACAGgttacatact ... ccttttccagGGATGCAAAGTAGTCTTCTGGCTCTTGCACTTGCAAATAGGTTTTTCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatatctgaaaaatatgtatgagaactaattgagttgctgcccttttccagGGATGCAAAGTAGTCTTCTGGCTCTTGCACTTGCAAATAGGTTTTTCCAAGATTCACTTGTGGGAGTGCCTCCAGCAATCTCTGTAAGTCTATAA
                           aactaat  putative branch site (score: 2)
                                      ttgctgcccttttcc  putative PPT
     atatctgaaaaatat  TA-rich tract