1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctagaggattgttgaggtacatggccagccagtttggcatgtcctaatcactgaacaaataagtgtactaatatgttctttatgtcccttctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAACCCAGATGGAATACTGGTGGACTCTCAGACTGGAAAG
species | Vitis vinifera |
transcript | Vv00s1206g00020.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAAT CATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAACEST: gi|349827954|gb|FQ422822.1|FQ422822
genomic: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAATgtaagcatct ... ctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAAC
EST: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAAT CATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAACEST: gi|294964449|gb|GW838252.1|GW838252
genomic: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAATgtaagcatct ... ctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAAC
EST: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAAT CATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGCCATTGTTGGTGACAAC
genomic: TGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCAGTGAATgtaagcatct ... ctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAAC
aatcactgaacaaataagtgtactaatatgttctttatgtcccttctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAACCCAGATGGAATACTGGTGGACTCTCAGACTGGAAAG
tactaat putative branch site (score: 1)
ttctttatgtcccttc putative PPT
taatatgttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagaggattgttgaggtacatggccagccagtttggcatgtcctaatcactgaacaaataagtgtactaatatgttctttatgtcccttctgtttacagCATACCTCTTTGAGTCCAGATGGTAAGCTTCTTGTCATTGTTGGTGACAACCCAGATGGAATACTGGTGGACTCTCAGACTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - -tacatgg
- - - - - - - - - - - - ccagcca
- - - - - - - - - - - - - - - - - - gcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa