Sequence
atgc intronic sequence ATGC exonic sequence...tgagatttaagagcttgttttatcaatttgatatatcatccacattcttctatatagatatttctttgtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0630g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g28040.1 (Oryza sativa), 3'ss of exon 4
-------tgagatttaagagcttgttt--tatcaatttgatat-atcatccac--attcttctatatagatatttctttgtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
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gtacgcaataaatgcaactatttgttgaacattggctcactgttattacttattagtttcttagaattgatttatcattgcttggatctacctaagtcagtataacatgtagGGTTTCTTAGCACGTGCCAATGGAATTCCTGCTCTGGAGCTATACAAACTTGCTCAGAAAAAGAACAGGAAACTTGTTCTGTGCGGACATTCGCTTGGTG
upper sequence: Vv00s0630g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G148913_T01 (Zea mays), 3'ss of exon 4
tgagatttaagagcttgttttatcaatttgatatatcatccacattcttctatatagatatttctttgtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
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------gtatgcatcttcatcctgaatcagtt-catcttgtgtataccattgtg--gttaggttttggtga---tttgcctaacttaatataccatacagGGTTTCTTGGCTCGTGCTAATGGAATTCCAGCACTGGACCTATACAATCTTGCACAGAAAAGAAACAGGAAACTTGTTCTTTGTGGACACTCACTTGGTG
upper sequence: Vv00s0630g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G09740.1 (Glycine max), 3'ss of exon 5
----------------tgagatttaagagcttgtt-ttatcaatttgatatatcatccacattcttctatatagatatt---tcttt--------gtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
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gtatctcaatcaagaataaaattgcaaccttagttcttgatattttgttat-tgatcaatattatt-tgtgtaaatattatgtcttttgattccaataatttccttcaaaattcatattacttctcagGGTTTCATGGCTCGTGCTAAAGGAATACCTGCTTTAGAATTATATAGGCTTGCTCAGAAGAAGAAACGCAAGCTTGTTCTATGTGGCCATTCACTTGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttctatatagatatttctttgtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
ttcttctct CT-rich tract
tatatagatatttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagatttaagagcttgttttatcaatttgatatatcatccacattcttctatatagatatttctttgtaaatgtttatttggtggaaattcttctctagGGTTTCTTGGCTCGTGCTAAAGGGATACCTGCTTTGGAGTTGTACAGGCTGGCTCAGAAGAAGAAACGGAAACTTGTTCTTTGTGGTCATTCACTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - gagcttg
- - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgga