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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatccatatgatcctaattggacgcactatccttgatccttctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG

Basic information

species Vitis vinifera
transcript Vv00s0620g00020.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g51180.1 (Oryza sativa), 3'ss of exon 3
----agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatca-tccatatgatcctaattggacgcactatccttgatccttctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG
     || ||       |||  |   | | || |  || |  |    |   | || | | | ||||  | |    ||  | | ||    | | ||  |     ||||||||||| | || || ||| ||||||| || ||||||||| |||| ||| | |||||||||||| ||||||||||||| ||||| ||| |  |     
aaagggttttctaagtaattgcttgaagttagcactccgtgcgattcaagtagcaattcgtttgatagtgaaataaca-attttctaccaccatttca----cagGAGATGACTTTGGAGGAATATGAGAAAGTGCTGGAGGAGAAGCGGAAAGCTTTGCTTGCACTGAAGGCTGAGGAGAGGAAAGTTGAAGTCGACAAGGAGT

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g41880.1 (Oryza sativa), 3'ss of exon 3
agtattaatctgcatttttaagaatcagaaaaccttctggcatatt-catcatccatatgatcctaattggacgcactatccttgatccttctaatg-atagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGT---CAAAGACTTTG
 | | | | |   |   |  | ||     |  |    || | |||   ||  | |    | |||| |||  |   | | |  ||     |||   |  | ||||||||||| | || || ||| |||||||||| |||||||||||||| ||| | ||| ||||||||  ||| ||||| |||||||  ||   ||| || |   
-gcacttaccattacaatacaaaaggcagatgctcaatgccttatagtatgttgccaccggtccttattaaat-tattctttttccctattcgggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTTTGCTTTCACTGAAGGTTGAAGAGAGAAAGGTTGTGGTGGACAAGGAAT---

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g45660.2 (Oryza sativa), 3'ss of exon 3
--agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatccatatgatcctaattggacgcactatccttgatccttctaatgat--agGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGA---TGTCAAAGACTTTG
   | |||| ||       ||     |   | |  | ||| | |  |  || ||  || ||  | ||  |   | |  |||  || |    | | |||||  |||| ||||||||||| |||| | ||||| ||   |||||||||||||| || || ||| |  |||||||||| ||||||||||||||   || ||| || |   
tctgaattactcctataacttccttttacaacagtcgtctagga-gtgtattat--atttgtccatacctcctctc-ttatgattcaaatgtttgatgatatagGAAATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAGAAGAGGAAAGCACTTCTTTCTTTGAAGACTGAAGAGAGGAAGGTTGAAATTGACAAGGATT---

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g52390.1 (Oryza sativa), 3'ss of exon 3
agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatcca-tatgatcctaattggacgcactatccttgatccttctaatga-tagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG
  |   | |     |  ||  || | |      || ||     |||     |  | || ||||   | ||  | | | ||  |      ||||| |   ||||||||||||||||| |||| | ||||| ||   ||||| ||| |||| ||||| |||||  | ||| |||| |||||||||||||| ||| |  |     
-ttcccagtgaatttaattgtga-ttattgcttctgctaatgcatttgctgtataataagatcagcactgacctcccaatgttattatattctactatctagGAGATGACTCTTGAGGAGTTTGAGAAATTAAGGGAGGAAAAGCGGAAAGCTCTTCTTGCTTTCAAGGCTGAAGAGAGGAAGGTTGAGGTCGATAAGGACC

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G055276_T03 (Zea mays), 3'ss of exon 3
agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatccatatgatcctaattggacgcactatccttgatccttctaatga------tagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG
    || | |||  || | || || |  ||   | |  | |   ||| |   || | | ||  || | |  |  |     ||   ||||  || | |       ||||||||||||| || || | | ||||| ||   |||||||||||||| || ||||||||| ||||| ||||||||||||| ||||| ||  |  |   | 
----ttcaactgttttctgaataagctaaag--cctaagcctatttcctggcccttgtaatgatattggtgcagatcgatctacttcctaatattcagctatgcagGAGATGACTCTGGAGGAATTTGAGAAAATAAGAGAGGAGAAGAGGAAAGCACTACTTGCATTGAAGGCTGAGGAGAGGAAAGTTGAAGTTGACAAGGATT

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G116282_T02 (Zea mays), 3'ss of exon 3
agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatccatatgatcctaattggacgcactatccttgatccttctaatga------tagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG
    || | |||  ||   || || |  ||   |   || |   ||| |   || | | ||  || | |  |  |  |  ||   || |  || | |       ||||||||||||| || || | | ||||| ||   |||||||||||||| || ||||||||  ||||| ||||||||||||| ||||| ||  |  |   | 
----ttcaactgttttccgaataagctaaag--ccgatgcctatttcctggcccttgtaatgatattggtgcatatcaatctacctcataatattcagctatgcagGAGATGACTCTGGAGGAATTTGAGAAAATAAGAGAGGAGAAGAGGAAAGCACTACTTGCGTTGAAGGCTGAGGAGAGGAAAGTTGAAGTTGACAAGGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77587239|gb|DV222753.1|DV222753
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGTAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|352791165|gb|FQ477492.1|FQ477492
EST:     ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|77577322|gb|DV217376.1|DV217376
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGTAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|37188106|gb|CF607457.1|CF607457
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110731204|gb|EE109160.1|EE109160
EST:     ACAAGGAGAATCCTGTCAATGAATCAAAGGAGAANGAGCCTGANGATAAN                         GAGATGACTCTTGAAAAGTATCAAAAAGTACTTTGAGGAGAAGAGGAAGGC
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTT-GAGGAGAAGAGGAAGGC
EST: gi|110359128|gb|EC920107.1|EC920107
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110723332|gb|EE100522.1|EE100522
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110370201|gb|EC929090.1|EC929090
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110398617|gb|EC965086.1|EC965086
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110725585|gb|EE102258.1|EE102258
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110732545|gb|EE107924.1|EE107924
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110717666|gb|EE093720.1|EE093720
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110357737|gb|EC921443.1|EC921443
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|45770427|gb|CN006279.1|CN006279
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110368329|gb|EC932301.1|EC932301
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110693297|gb|EE069415.1|EE069415
EST:     CTGAGGATAAG                         GTGATGCACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGC
genomic: CTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATG-ACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGC
EST: gi|34543489|gb|CF511721.1|CF511721
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|352763478|gb|FQ473181.1|FQ473181
EST:     ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|33405741|gb|CF211368.1|CF211368
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|34543575|gb|CF511807.1|CF511807
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|30328437|gb|CD011699.1|CD011699
EST:     ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110688083|gb|EE066227.1|EE066227
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110702828|gb|EE079139.1|EE079139
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110399338|gb|EC965841.1|EC965841
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|71875666|gb|DT024721.1|DT024721
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|110685092|gb|EE063119.1|EE063119
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|27579184|gb|CB001879.1|CB001879
EST:     ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|87584682|gb|DY473753.1|DY473753
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|33406485|gb|CF212112.1|CF212112
EST:     ACAAGGAGAACCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACACTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
EST: gi|30320328|gb|CD003590.1|CD003590
EST:     ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAG                         GAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTCAATGAATCAGAGGAGAAGGAGCCTGAGGATAAGgtaaatgtct ... ctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcatccatatgatcctaattggacgcactatccttgatccttctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG
                                           ttctaat  putative branch site (score: 2)
                                 tccttgatccttct  CT-rich tract
                                              taatgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtattaatctgcatttttaagaatcagaaaaccttctggcatattcatcatccatatgatcctaattggacgcactatccttgatccttctaatgatagGAGATGACTCTTGAAGAGTATCAGAAAGTACTTGAGGAGAAGAGGAAGGCTCTACTTGCACTGAAGACTGAGGAGAGGAAGGTTGATGTCAAAGACTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - -ctgcatt
- - - - - - - - - - agaatca
- - - - - - - - - - - - - -gaaaacc
- - - - - - - - - - - - - - - - - ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacgca