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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaagtacatgtacattcctcttggagggtctgagagaaagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttagGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG

Basic information

species Vitis vinifera
transcript Vv00s0581g00010.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G042981_T01 (Zea mays), 3'ss of exon 13
gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttaca-aaatttgtttttaaGTACATGTACATTCCTCTTGGAGGGTCTGAGAGAAAGCTTCTGAATATATGGGTTATAGTTATTTAATTCTTGCAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG
                                                          ||| ||| | |    |   || |  ||   | |   |  ||   || | | | || |   |  |||   |  | | | ||| |        | |   |||||   |||||| | |||||||||||||| || ||||| ||||| || ||||  || ||||| |||||||| ||||| || || ||||||||  |||| ||
----------------------------------------------------------acataaagtggaacatgtctatac-taagctacatctatag---ctaatatacagatataggttattctg--tgttgctatgtttgatcaaccactcttgttac-agGTACTTATACATTCCTCTTGGTGGTTCTCAAAGAAAACTACTGAGTATCTGGGTGATATTCACGTTTGTAGCAGTGTGGCATGATCTAGAATG

upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGAGGGTCTGAGAGAAAGCTTCTGAATATATGGGTTATAGTTATTTAATTCTTGCAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG
                                                                           || ||  || |||| | ||   || | ||          | ||  |     | | |||  |  | || | | |     |     || ||||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||
---------------------------------------------------------------------------gtgca-ataaattctttttcctggatttg--------tctttgttttcccagataataact--taaaatttggatgggtcaaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG

upper sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 13
gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGAGGGTCTGAGAGAAAGCTTCTGAATATA-TGGGTTATAGTTATTTAATTCTTGCAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG
                                                                           || ||  ||  ||| | ||   || | |        | ||    | ||| ||  ||| | ||  || ||   | |||||||       ||||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||
---------------------------------------------------------------------------gtgca-ataagttctttttcctggatttttctctttgttttcccagataatgacttaaaatt--ttgatgtgt-caaaattc------agGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttagGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG
                           atttaat  putative branch site (score: 4)
                                            tttgttttt  putative PPT
                   ttatagttatttaatt  TA-rich tract