1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtcggtcgtcaaacactgaatgatataaggtcaaatagacacatgtatttgttgttttattaggcagttagatgtaacatatgctcccgtgtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGGGTGAATTCTACATCAAGTCCATGATTGACGCAGATCGGGCCATGTCCT
species | Vitis vinifera |
transcript | Vv00s0445g00020.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|110723588|gb|EE101074.1|EE101074
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|77585571|gb|DV221879.1|DV221879
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|110360592|gb|EC923821.1|EC923821
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|77581729|gb|DV219812.1|DV219812
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|110409044|gb|EC974698.1|EC974698
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|110390977|gb|EC955927.1|EC955927
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|110372286|gb|EC936439.1|EC936439
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGEST: gi|34416503|gb|CF415257.1|CF415257
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
EST: ACATTACTCCTGAGGCTTTTGAGAAATATCAAATACTTGGCATGGATATG GGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
genomic: ACATTACTCCTGAGGCTTTTGAGAAATATCGAATACTTGGCATGGATATGgtatgctttg ... gtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCG
tatttgttgttttattaggcagttagatgtaacatatgctcccgtgtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGGGTGAATTCTACATCAAGTCCATGATTGACGCAGATCGGGCCATGTCCT
atgtaac putative branch site (score: 3)
ttgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcgtcaaacactgaatgatataaggtcaaatagacacatgtatttgttgttttattaggcagttagatgtaacatatgctcccgtgtgtgggcagGGATTTCGGTACGTGGCCTCAGGACCCATGGTGAGGTCTTCATACAAGGCGGGTGAATTCTACATCAAGTCCATGATTGACGCAGATCGGGCCATGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -caaacac
- - - - - - - - -gaatgata
- - - - - - - - - - - - - - - -caaatag
- - - - - - - - - - - - - - - - - - - acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctccc