1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttttcctgctagaagttttccttcaaaggttttttgaaatttgaatattgcttgaataaattacttgctcacagaggccatttttaaccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCATTTCTGGTTAGATGTGGAGCACATTCAAGAAGCTATTCAGAATGTCTTGG
species | Vitis vinifera |
transcript | Vv00s0404g00020.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACAAAGTTCATGTGCGTCAAAGGGATTGTTTTTCT-CTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGEST: gi|110720058|gb|EE097300.1|EE097300
genomic: GACAAAGTTCATGTGCGTCAAAGGGATTGTTTT-CTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGG
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCATCATTCGATCACACCATEST: gi|351030194|gb|FQ432132.1|FQ432132
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCCTTTGGCAG GGCATTGTGCTCGAGEST: gi|161718894|gb|FC067003.1|FC067003
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAG
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCAT-GTGCTCGAGAT-CTAGT-GCACTGG-CATCAT-CGATCACAC-ATEST: gi|351039382|gb|FQ461249.1|FQ461249
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTEST: gi|30127638|gb|CB912977.1|CB912977
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATT
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCATEST: gi|33404104|gb|CF209731.1|CF209731
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
EST: GACAAAGTTCATGTGNCG-CAAAGGGNTTGTTTTCTTCTGCTTTTNGCAG GGCATTGTGCTCGAGATTCTAEST: gi|33404188|gb|CF209815.1|CF209815
genomic: GACAAAGTTCATGTG-CGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTA
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCATCATTCGATCACACCATEST: gi|30124784|gb|CB910123.1|CB910123
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCATEST: gi|110381469|gb|EC934548.1|EC934548
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
EST: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAG GGCATTGTGCTCGAGATTCTAGTTGCACTGGGCATCATTCGATCACACCAT
genomic: TGACAAAGTTCATGTGCGTCAAAGGGATTGTTTTCTTCTGCTTTTGGCAGgtacaacttc ... ccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCAT
gaatattgcttgaataaattacttgctcacagaggccatttttaaccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCATTTCTGGTTAGATGTGGAGCACATTCAAGAAGCTATTCAGAATGTCTTGG
ttttaac putative branch site (score: 2)
ttgaataaattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttcctgctagaagttttccttcaaaggttttttgaaatttgaatattgcttgaataaattacttgctcacagaggccatttttaaccacatgcagGGCATAGTGCTCGAGATTCTAGTTGCACTGGGCGTCATTCGATCACACCATTTCTGGTTAGATGTGGAGCACATTCAAGAAGCTATTCAGAATGTCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - -cctgcta
- - - - - - - - - - - ccttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcaca