1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttagttgggggtgttttcgtgcttagtattgcattttcatgtcttctacacttaacatgaatttctaacatcttttttcctttctgcatttgtttcagGTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCTTCAGCGGACGCCTTCCTCTGGCAGATATTCCAAGAATACTTCTCCAGTG
species | Vitis vinifera |
transcript | Vv00s0370g00030.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACG GTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCTEST: gi|161708801|gb|FC060073.1|FC060073
genomic: CTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACGgtaagcattt ... tttgtttcagGTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCT
EST: CTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACG GTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCT
genomic: CTAAAGTCTATGCTTGGTCAATTTAGTCAGAAACGTCAGGGTTCCCCACGgtaagcattt ... tttgtttcagGTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCT
ttctacacttaacatgaatttctaacatcttttttcctttctgcatttgtttcagGTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCTTCAGCGGACGCCTTCCTCTGGCAGATATTCCAAGAATACTTCTCCAGTG
ttctaac putative branch site (score: 1)
catcttttttcctttc CT-rich tract
aatttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagttgggggtgttttcgtgcttagtattgcattttcatgtcttctacacttaacatgaatttctaacatcttttttcctttctgcatttgtttcagGTCTCTGCAAGGGATGGGTAAACGGTTAAAGTCTGAGTTTACACGAGGTCTTCAGCGGACGCCTTCCTCTGGCAGATATTCCAAGAATACTTCTCCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - gggggtg
- - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgaa