Sequence
atgc intronic sequence ATGC exonic sequence...gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G11100.1 (Glycine max), 3'ss of exon 5
-----gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
| ||| || || || | ||||||| ||| || || | | || | | || | | || || |||||| | |||||||||||||||||| ||||| || |||| |||||| |||||| || ||||||||||||||||||| ||||||||| |||| ||||||| ||
ttgaaagtaagaaaaatacaattt---atctttcaaaataaatcaatggtgatgaaagatcacatatttgttgct-tagcaggttttatcttggttg-attgcagATTCAAAGGCTCAGTGGTGTTGATTCTGATTTCGCTCCATTTGTGCAACATGCAGGGGTTCCATCTGTTGATGTATATTATGGAAAAG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatat-ggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
| |||| | || ||| | ||| | | || ||| | | | | ||| | | | ||| || || |||||||||||||| ||||| |||||||| |||| |||||| |||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G23220.1 (Glycine max), 3'ss of exon 4
gctttataa----attatggc--tttggatatgtcaaaatttatcttt-gttgtttctatatggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTT--GATTTATACTATGGAAGAG----
||||| |||||| | || | || || ||| || || | || | | |||| | | | |||| | | ||||||||||||||| |||||||| |||| ||||||||||||| || |||| || ||||||||||| | || ||| | || ||||||||||
---ttatagccgtattatgataatgtgtttttgccatgctttttccaaagtgggtttcaattttgttgttctatttggtagccacttttgtttgattg----cgcagATTCAAAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAGCACGCAGGGGTTCCATTCATTTTGATATGTATTATGGAAGAGTTAT
upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggattgta-tgaagtaattattggga-----ttgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
|||||| | ||| | || | | || ||| || || | || | | | || | | ||| | | |||| ||| || ||||||||||| ||||| |||||||| |||| |||||||||||| || ||||||| ||||||||||| || |||| | || ||||||||||
-tattataa-taatg--tctgtttttcccattttttttcaaagtgggtttcaactttgtcgtggtatcctcattgctaagccacttttgttttgttgg--ttgcagATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttctatatggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
tatgaagtaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -tatggct
- - - - - - - - - - - - - -tcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg