1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaagtgccccttttggtgaaatatacagatatcccccaaacaaagcaatttttatgtatttttaatcatcctatatactacatcaatttttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTGGTTTTGATCAGAGAGGAAGCCCGGAATATGATGGGAGGTGGAATACTAG
species | Vitis vinifera |
transcript | Vv00s0333g00020.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGATGATTTACTAGAG ACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTGEST: gi|351036712|gb|FQ457425.1|FQ457425
genomic: AAGCTGATGATTTACTAGAGgtaattactg ... ttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTG
EST: CAGGGGCAAATCTAAATGATATAGCGAACCAAGCTGATGATTTACTAGAG ACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTGEST: gi|351036711|gb|FQ457424.1|FQ457424
genomic: CAGGGGCAAATCTAAATGATATAGCGAACCAAGCTGATGATTTACTAGAGgtaattactg ... ttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTG
EST: CAGGGGCAAATCTAAATGATATAGCGAACCAAGCTGATGATTTACTAGAG ACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTG
genomic: CAGGGGCAAATCTAAATGATATAGCGAACCAAGCTGATGATTTACTAGAGgtaattactg ... ttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTG
gcaatttttatgtatttttaatcatcctatatactacatcaatttttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTGGTTTTGATCAGAGAGGAAGCCCGGAATATGATGGGAGGTGGAATACTAG
ttttaat putative branch site (score: 3)
tttttttttgc putative PPT
ttttatgtatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagtgccccttttggtgaaatatacagatatcccccaaacaaagcaatttttatgtatttttaatcatcctatatactacatcaatttttttttgcagACAATGGAAACTCGCCCAGTTGTTCCTGATCGAAAGCTACTTGCAAGACTGGTTTTGATCAGAGAGGAAGCCCGGAATATGATGGGAGGTGGAATACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -ccccttt
- - - - - - - - - - - -atacaga
- - - - - - - - - - - - - - - -atccccc
- - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatcaa