Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctcttgaaactatatatttgaattcaattcctatcagataatcgaatggaacaacaatatgtcactggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG

Basic information

species Vitis vinifera
transcript Vv00s0323g00040.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0323g00040.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G032266_T01 (Zea mays), 3'ss of exon 3
------------------------------gttcctcttgaaactatatatttgaatt-------caattcctatcagataatcgaatggaacaacaatatgtcactggtga-tgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG
                                | | ||  ||| || | |  ||||         || || || ||      ||              | ||  | |    | || ||||||||||||||||| |||| |||||||| ||  ||||||||| ||| ||||| |||  ||
gtgggcacccttccttccctttcctttccttgtacactgcaaattacaaaaatgaaccggctgaacagtttctctctctctctctctctctctgtgtgtgtggaattaaaaaatgcagGAGATGGAAGACAGACTGATCGAGCTGGAGGCGATGCAGAAGGTTCTTCTTGAGGGAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045677|gb|FQ440862.1|FQ440862
EST:     ACTTGCAATCTGAACTGGGACAACCTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|18458960|gb|BM437238.1|BM437238
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|28961923|gb|CB340981.1|CB340981
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349812568|gb|FQ407187.1|FQ407187
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|352782030|gb|FQ469328.1|FQ469328
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351013034|gb|FQ433761.1|FQ433761
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAGGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|294966047|gb|GW837414.1|GW837414
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351024091|gb|FQ423514.1|FQ423514
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|28964858|gb|CB343891.1|CB343891
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|110428331|gb|EC994800.1|EC994800
EST:     GGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: GGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349825131|gb|FQ415678.1|FQ415678
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|28964910|gb|CB343943.1|CB343943
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|110372937|gb|EC937134.1|EC937134
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351052007|gb|FQ450698.1|FQ450698
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351023061|gb|FQ430936.1|FQ430936
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351014068|gb|FQ434220.1|FQ434220
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351034821|gb|FQ458178.1|FQ458178
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349810037|gb|FQ398662.1|FQ398662
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349818743|gb|FQ409277.1|FQ409277
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349833110|gb|FQ416488.1|FQ416488
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|26261480|gb|CA812543.1|CA812543
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351035150|gb|FQ458507.1|FQ458507
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351044715|gb|FQ443246.1|FQ443246
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|110427789|gb|EC994240.1|EC994240
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351024906|gb|FQ433323.1|FQ433323
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351051811|gb|FQ455225.1|FQ455225
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|32248420|gb|CD714239.1|CD714239
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|32244984|gb|CD710803.1|CD710803
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349832594|gb|FQ421952.1|FQ421952
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351043470|gb|FQ428942.1|FQ428942
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349823321|gb|FQ402520.1|FQ402520
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351014302|gb|FQ437304.1|FQ437304
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|352769266|gb|FQ471415.1|FQ471415
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|110699852|gb|EE077230.1|EE077230
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351013822|gb|FQ433974.1|FQ433974
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351017299|gb|FQ435651.1|FQ435651
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351044247|gb|FQ447601.1|FQ447601
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|110684606|gb|EE062073.1|EE062073
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351025451|gb|FQ435143.1|FQ435143
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351040609|gb|FQ438153.1|FQ438153
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCGCTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|351045771|gb|FQ440956.1|FQ440956
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349825132|gb|FQ415679.1|FQ415679
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|51050325|gb|CO818492.1|CO818492
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|349830964|gb|FQ418248.1|FQ418248
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
EST: gi|18459240|gb|BM437518.1|BM437518
EST:     ACTTGCAATCTGAACTGGGACAACTTCGATTTTCTGTGTCAAAAACTGAG                         GAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT
genomic: ACTTGCAATCTGAACGGGGACAACTTCGATTTTCTGTGTCAAAAACTGAGgttcctcttg ... ggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaattcctatcagataatcgaatggaacaacaatatgtcactggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG
                               aacaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcctcttgaaactatatatttgaattcaattcctatcagataatcgaatggaacaacaatatgtcactggtgatgtagGAGATGGAAGACAGATTGATAGAGCTGGAAGCACTGCAGAAGGCTCTGCTTGAAGGAACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA