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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaaccttagtaacttttgtacggagtatttgtttatcgcattgatatatatcatgcgcttctaactgcgtttcataatcaatcactgtttccagATTCACAAAGTACCAGCTACTGACGTGGAAGCACTTAAATCCCCACTAATGGGACTATTTGAAAAACGCCGTGCTCGGAAATTCTTCATTTATGTGCAGG

Basic information

species Vitis vinifera
transcript Vv00s0313g00050.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 3'ss of exon 4
gtgtgaaccttagtaacttttgtacggagtatttgtttatcgcattgatatatatcatgcgcttctaact-gcgtttcataatcaatcactgtttccagATTCACAAAGTACCAGCTACTGACGTGGAAGCACTTAAATCCCCACTAATGGGACTATTTGAAAAACGCCGTGCTCGGAAATTCTTCATTTATGTGCAGG
||||| | || |   | |  | |     | |  |||  |   ||||| |  || |  ||   | || | |  | |||  |  |    |  |     ||||| |||||||| || || ||||| || || ||  | |||||    |||||||| || |||||||| ||||||||| ||||||||||||| || |||||||
gtgtggatctgat--attcatatgttatgcaactgtcaa--acattggtgcattttctgaattactgagtcacctttatttgtttggcgataccgacagATCCACAAAGTTCCTGCAACTGATGTCGAGGCCTTGAAATCTAATCTAATGGGCCTTTTTGAAAAGCGCCGTGCTAGGAAATTCTTCATATACGTGCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatatatatcatgcgcttctaactgcgtttcataatcaatcactgtttccagATTCACAAAGTACCAGCTACTGACGTGGAAGCACTTAAATCCCCACTAATGGGACTATTTGAAAAACGCCGTGCTCGGAAATTCTTCATTTATGTGCAGG
                   ttctaac  putative branch site (score: 1)
                                             ctgtttcc  putative PPT
     tatatatcat  TA-rich tract