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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccaatgttttactcgatttaatacttgcatggtcttcaatctgatttttttctgtaactttaatggctctaattataaggactcttcctctgttacatacagACAATTTGACAGAGGCACTCATGTTCTTATCACATTTTATTGGGGATGTCCATCAG

Basic information

species Vitis vinifera
transcript Vv00s0301g00110.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0301g00110.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G21585.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcaccaatgttttactcgatttaatacttgcatggtcttcaatctgatttttttctgtaactttaatggctctaattataaggactcttcctctgttacatacagACAATTTGACAGAGGCACTCATGTTCTTATCACATTTTATTGGGGATGTCCATCAG
                     |   ||||| |    ||    | | ||| |   || | | | | ||  ||||  |  |   |   ||||  || |    |   | ||||||| ||||||||||| |||||||||||||||||||||||||| ||| | || |||
-----------------gtgagtgataatattatagtgagtctgattctaaagcttctgtttgagttctatggagcatagagttgtgactagtctt----tgtctgcagACAACTTGACAGAGGCTCTCATGTTCTTATCACATTTTATTGGAGATATTCACCAG

upper sequence: Vv00s0301g00110.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G21590.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagcaccaatgttttactcgatt-taatacttgcatggtcttcaatctgatttttttctgtaactttaatggctctaattataaggactcttcctctgttacatacagACAATTTGACAGAGGCACTCATGTTCTTATCACATTTTATTGGGGATGTCCATCAG
|| ||    |  ||| || |  ||| | ||||||   ||        | ||| || | |     |   |||| |    | ||    ||  | ||  | || |   | |||| || || |||||||| ||||||||||||||||||| ||| || ||| ||||||||
gtgagt--tagagttctagtgaattctgatacttttgtg--------tgtgagttatatgaagcatcataatagtgtgactt----ggtgtttttttttgctt--tgcagATAACTTAACAGAGGCTCTCATGTTCTTATCACATTATATGGGAGATATCCATCAG

upper sequence: Vv00s0301g00110.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G21600.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagcaccaatgttttactcgatttaatacttgcatggtc--ttcaat---ctgatttttttctg-------taactttaatggctctaattataaggactcttcct-ctgttacatacagACAATTTGACAGAGGCACTCATGTTCTTATCACATTTTATTGGGGATGTCCATCAG
|| ||    |   ||| | |  || | ||||||   |      |||| |   ||||||| | | ||         |   |||| |    | ||| |||   | ||| | |||||     ||||||| ||||||||||| ||| ||||||| ||||||| ||| || ||||| ||||||
gtgagt--tagattttaagtgaatctgatacttcttttaatgtttcagtttactgatttctgtgtgagtacatcgatcataatagtgtgacttagaagtctttttctttctgttcttggcagACAACTTGACAGAGGCTCTCTTGTTCTTGTCACATTATATGGGAGATGTTCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctgtaactttaatggctctaattataaggactcttcctctgttacatacagACAATTTGACAGAGGCACTCATGTTCTTATCACATTTTATTGGGGATGTCCATCAG
                   ctctaat  putative branch site (score: 3)
                                  ctcttcctctgttac  putative PPT
                    tctaattataa  TA-rich tract