Sequence
atgc intronic sequence ATGC exonic sequencegtatcctttgtccttttaagattttggatgcttttggtgatgatacatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGATCGCCATTGGACAATGCCTGACGAAAAATGGAGACACATTGTAGATGATTTTGCAGCTACATTTAGCATAACCCGGCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0299g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G41590.1 (Glycine max), 3'ss of exon 5
gtatcctttg--tcct-tttaagattttggatgc-------ttttggtgatgatacatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGATCGCCATTGGACAATGCCTGACGAAAAATGGAGACACATTGTAGATGATTTTGCAGCTACATTTAGCATAACCCGGCATT
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gtatccttttactcctattttttattgtcagtgtagaactgtgtttgttctgtcaataatagttattaagttgaagcaatacttctttcattctttaacatctgta--gTTTCTGTATTATTTATATGATCGCCACTGGACAATTCCTGAAGAAGAATGGAGATACATACTTGAGGACTTTGCTGCTACATTTAGTATTAGCAGGCACT
upper sequence: Vv00s0299g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03840.1 (Glycine max), 3'ss of exon 5
gtatccttt---------gtccttttaagattttgga--tgcttttggtgatgatacatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGATCGCCATTGGACAATGCCTGACGAAAAATGGAGACACATTGTAGATGATTTTGCAGCTACATTTAGCATAACCCGGCATT
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gtatccttttacccccaaattttattgtgggtgtagaactgtgtttgtttctgttaataatagttattaagttgaagcaatacttatttcattccttaacatctgta--gTTTCTGTATTATTTATATGATCGCCACTGGACAATTCCTGAAGAGGAATGGAGATACATACTGGAGGACTTTGCAGCTACATTTAGTGTTAACAGGCACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGATCGCCATTGGACAATGCCTGACGAAAAATGGAGACACATTGTAGATGATTTTGCAGCTACATTTAGCATAACCCGGCATT
ttccttaac putative branch site
ttacttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcctttgtccttttaagattttggatgcttttggtgatgatacatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGATCGCCATTGGACAATGCCTGACGAAAAATGGAGACACATTGTAGATGATTTTGCAGCTACATTTAGCATAACCCGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT