Sequence
atgc intronic sequence ATGC exonic sequence...gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G11100.1 (Glycine max), 3'ss of exon 5
-----gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
| ||| || || || | ||||||| ||| || | | | || | | || | | || || |||||| || |||||||||||| ||||| ||||| || ||||||||||| |||||| || ||||||||||||||||||| ||||||||| |||| ||||||| ||
ttgaaagtaagaaaaatacaattt---atctttcaaaataaatcaatggtgatgaaagatcacatatttgttgct-tagcaggttttatcttggttg-attgcagATTCAAAGGCTCAGTGGTGTTGATTCTGATTTCGCTCCATTTGTGCAACATGCAGGGGTTCCATCTGTTGATGTATATTATGGAAAAG
upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatat-ggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
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-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgta-tgaagtaattattgggattgtcttggct---ggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
|||||| | ||| | || | | || ||| || || || | | | || | | ||| | | | ||| | | ||||||||||||||||| |||||||| ||||| |||||||||||| || ||||||| ||||||||||| || |||| | || ||||||||||
-tattataa-taatg--tctgtttttcccattttttttcaaagtgggtttcaactttgtcgtggtatcctcattgctaagccacttttgttttgttggttgcagATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAG
upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G23220.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgta----tgaagtaattattgg-gattgtcttggctggattg--cagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTT--GATTTATACTATGGAAGAG----
||||| | | || |||| ||| | | ||||| | | ||| || | || || | |||| || | | ||||| |||||||| ||||| |||||||| |||||||||||||||||| || |||| || ||||||||||| | || ||| | || ||||||||||
---ttatag-ccgta-ttatgataatgt--gtttttgccatgctttttccaaagtgggtttcaattttgttgttctatttggtagccacttttgtttgattgcgcagATTCAAAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAGCACGCAGGGGTTCCATTCATTTTGATATGTATTATGGAAGAGTTAT
upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
|| | | | || | || || | | | | | |||| | | | ||| || || | |||||||||||||||||||| |||| |||||||||||| | || | || ||||| ||| | || ||| | || | ||||||||| ||
------------------------gtgagtagactattcaaaagagctcatacattgtctttgtaatgtaaaactatgtaatgttttaa-tgaactgcagATTCAGAGGCTAAGTAGAGTAGATTCTGATTTTTCCGGTTTTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctatatggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
tatgaagtaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatatggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -tatggct
- - - - - - - - - - - - - -tcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg