1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actccactcatatatgacaatgaagcttccattgttggttgaaccagagcattgagatggtggagtcattggatgtcctaacaaatgtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT
species | Vitis vinifera |
transcript | Vv00s0260g00060.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110701184|gb|EE078492.1|EE078492
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|110703071|gb|EE079606.1|EE079606
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|32458485|gb|CD799659.1|CD799659
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: GGGGTGACACCCAATTGAGTTTGAACTCGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110371550|gb|EC935661.1|EC935661
genomic: GGGGTG--ACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110419372|gb|EC985591.1|EC985591
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: TTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|26263918|gb|CA814981.1|CA814981
genomic: TTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|26257413|gb|CA808476.1|CA808476
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|254917519|gb|GR903171.1|GR903171
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|110361110|gb|EC924563.1|EC924563
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110689576|gb|EE065919.1|EE065919
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|33409428|gb|CF215055.1|CF215055
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110377725|gb|EC942807.1|EC942807
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|51051736|gb|CO819206.1|CO819206
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|33410553|gb|CF216180.1|CF216180
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|351024512|gb|FQ426321.1|FQ426321
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|34416224|gb|CF414978.1|CF414978
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110694325|gb|EE071332.1|EE071332
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAEST: gi|33408493|gb|CF214120.1|CF214120
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|26258199|gb|CA809262.1|CA809262
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|33409349|gb|CF214976.1|CF214976
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGAEST: gi|110386208|gb|EC950788.1|EC950788
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
EST: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG GATGGGACCAAGGATTGTTGGGGATGTGCGTGGGTGAGAAGCGAAAGCTGA
genomic: AAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaag ... tcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGA
agagcattgagatggtggagtcattggatgtcctaacaaatgtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT
tcctaac putative branch site (score: 1)
tgtcttctttt putative PPT
taacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actccactcatatatgacaatgaagcttccattgttggttgaaccagagcattgagatggtggagtcattggatgtcctaacaaatgtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -ccactca
- - - - - - - - -caatgaa
- - - - - - - - - - - - gcttcca
- - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - -aaccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaat