1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tataccatctactggatggttatttgtggcaaactccaattgcactattttcttctgtttccgtctaaaattttgatttacataatattgtggcatccagATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACTGGAAGATCCTTCTCAGTATTCCAGGCTAGGACTTGTG
species | Vitis vinifera |
transcript | Vv00s0245g00050.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGATGATGTCCGGGATGAATTCTTAATTTACTGTCCACGAGAACTAAG ATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACTEST: gi|110430104|gb|EC996633.1|EC996633
genomic: AGTGATGATGTCCGGGATGAATTCTTAATTTACTGTCCACGAGAACTAAGgtaaggctaa ... tggcatccagATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACT
EST: AGTGATGATGTCCGGGATGAATTCTTAATTTACTGTCCACGAGAACTAAG ATTAGCATTCCCAGACGAGAATAATAGCAGCCTGCAGAAAATAGCAAAACT
genomic: AGTGATGATGTCCGGGATGAATTCTTAATTTACTGTCCACGAGAACTAAGgtaaggctaa ... tggcatccagATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACT
tattttcttctgtttccgtctaaaattttgatttacataatattgtggcatccagATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACTGGAAGATCCTTCTCAGTATTCCAGGCTAGGACTTGTG
tctaaaattttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataccatctactggatggttatttgtggcaaactccaattgcactattttcttctgtttccgtctaaaattttgatttacataatattgtggcatccagATTAGCATTCCCAGACGAAAATAATAGCAGCCTGCAGAAAATAGCAAAACTGGAAGATCCTTCTCAGTATTCCAGGCTAGGACTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - ccatcta
- - - - - - tggatgg
- - - - - - - - - - - - - - -caaactc
- - - - - - - - - - - - - - - - - - caattgc