Sequence
atgc intronic sequence ATGC exonic sequencegtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 4
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
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gtatctgcagatcctatca-ttcattcat---------tattctgattagaactaacaacaccaagttaacaatttttcttttgatgacatttt--tgtttg-aatgcagTGACTTTGCCAATATTTTTGATATGAATTGGTTCATTACTTATCTCGCAAAAGACATTACTATTGTTAAAAGAGTTCCTGATAAGGTCATGCGGTCCATG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03640.1 (Glycine max), 3'ss of exon 5
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttga--gttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
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--------------------gtaatttgcagttcc-tttgacgcattcaccat---gagaatcaa--gtttgttggttcatttaataaaaggcatttttgtttg-aatacagTGACTTCATCCATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGATGTTACTATTGTTAAAAGAGTTCCTGATAAGTTCATGCGGTCAATG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G41740.1 (Glycine max), 3'ss of exon 4
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
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gtaatttgcagttcctttcactcattcaccatgagactcaagtttgttg----------gttcatttaaatgaaggcatttttgtttga---------------atacagCGACTTCATCCATATTTTCGATGTCGATTGGTTCATTTCTTATCTCGCAAAAGATGTTACTATTGTCAAAAGAGTTCCTGATAAGTTCATGCGGTCAATG
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G15170.1 (Glycine max), 3'ss of exon 4
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
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gtatctgcagatcctatca-ttcattcat---------tattctgattagagctaacaaaactaagttaataatttttctttga--tgacattt-ttgtttg-aatgcagTGACTTTGCCAATATTTTCGATGTGAATTGGTTCATTACATATCTCGCAAAAGATATTACTATTGTTAAAAGAGTTCCTGATAAGATCATGCGGTCAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706756|gb|FC056366.1|FC056366EST: ACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG TGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAA
genomic: ACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgag ... tacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
tgttattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA