Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttcttggataaagtttccatttaattttattgaaaattagaggctctgtcaacagactatgaactgaacagtttgttttttctttataaaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------------------------agttcttggataaagtttccatttaa-------ttttattgaaaattagaggctctgtcaacagactatgaac-tgaacagtttgttttttctttataaaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG
                                                                             |||| |    |  || |||| |  ||       |||  |||   ||      ||        || | ||  ||  || |   |||  |    |||   |  | || ||||||||| ||||| || |||||| | ||||| || ||||||||||| || |||||||| | |||||||||||| ||||||||
gtatcacagtcacacacaactctagtgttcttggcaaacctatcatgtatcctttcctcaatcgaaatgctcccataagttgtcaactttagcttccttgcaaaagcctttttagttgtgtatgtagttcttctctcgtagcccatacacgcgagctcgttgactcaggtttt--atgtaatcagGTGCTTACAGTGATTCCCGAGGTATCCCTGGTATTAGGAAGGAAGTCGCCGAGTTCATCGAGAGGCGTGATGGTTATCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|33409277|gb|CF214904.1|CF214904
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110390025|gb|EC954908.1|EC954908
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGAC
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGAC
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349816294|gb|FQ399404.1|FQ399404
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|56408495|gb|CX016747.1|CX016747
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351023886|gb|FQ423309.1|FQ423309
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110429970|gb|EC996489.1|EC996489
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGAC
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGAC
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349819777|gb|FQ404499.1|FQ404499
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|27755104|gb|CB035859.1|CB035859
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|71856263|gb|DT005318.1|DT005318
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|77584537|gb|DV221338.1|DV221338
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|27578703|gb|CB001398.1|CB001398
EST:     TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|71859561|gb|DT008616.1|DT008616
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351040447|gb|FQ434580.1|FQ434580
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|161706058|gb|FC056227.1|FC056227
EST:     ATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: ATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349809424|gb|FQ411922.1|FQ411922
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|71857747|gb|DT006802.1|DT006802
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|27578701|gb|CB001396.1|CB001396
EST:     TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349808686|gb|FQ405830.1|FQ405830
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110385291|gb|EC949801.1|EC949801
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGAC
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGAC
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|71856656|gb|DT005711.1|DT005711
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAC
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|294965073|gb|GW838876.1|GW838876
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAG                         GTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG
genomic: TGCAATTGCAAGAGCTAAACACTACCTTTCATTGACTTCGGGTGGTCTAGgtaacctatt ... aaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtcaacagactatgaactgaacagtttgttttttctttataaaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG
                          agtttgttttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttcttggataaagtttccatttaattttattgaaaattagaggctctgtcaacagactatgaactgaacagtttgttttttctttataaaatgattagGTGCTTATAGTGACTCTCGAGGTCTTCCTGGAATAAGGAAGGAAGTGGCAGAGTTCATTGGGAGGCGTGATGGGTATCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -ggataaa
- - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - -caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac