1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatccataaacctcaatgtgcagaagagtttatgtttcttatgtgaatttcaatgtgtaaaaagctactgaatcttcttttgatgtatttcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAAGAAGCTGACCGAGACTAGGATGGATATCAGCAGTGGTTTAGTGTAATC
species | Vitis vinifera |
transcript | Vv00s0220g00030.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|34319677|gb|CF372431.1|CF372431
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|27580636|gb|CB003331.1|CB003331
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|32246334|gb|CD712153.1|CD712153
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110730178|gb|EE106958.1|EE106958
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110383296|gb|EC947661.1|EC947661
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110419842|gb|EC986096.1|EC986096
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|77578909|gb|DV218261.1|DV218261
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110426527|gb|EC992940.1|EC992940
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110686902|gb|EE063845.1|EE063845
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110380052|gb|EC945289.1|EC945289
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|27579125|gb|CB001820.1|CB001820
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|110731217|gb|EE109189.1|EE109189
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|27580948|gb|CB003643.1|CB003643
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|30125982|gb|CB911321.1|CB911321
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|34549721|gb|CF517953.1|CF517953
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|34544804|gb|CF513036.1|CF513036
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|27586320|gb|CB009015.1|CB009015
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAEST: gi|34544882|gb|CF513114.1|CF513114
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
EST: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAG ATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
genomic: GAATACATTGATGGACAGTTCACTGGAAACCTTGGAGAGATTTTGATCAGgtagctttca ... tcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGA
gaatttcaatgtgtaaaaagctactgaatcttcttttgatgtatttcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAAGAAGCTGACCGAGACTAGGATGGATATCAGCAGTGGTTTAGTGTAATC
ttttgat putative branch site (score: 4)
tatttcttct CT-rich tract
tgtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatccataaacctcaatgtgcagaagagtttatgtttcttatgtgaatttcaatgtgtaaaaagctactgaatcttcttttgatgtatttcttctacagATGTAACAATGTTCTCTATCTTCGTGGGGTACCGGAGGATGAAGAAATAGAAGAAGCTGACCGAGACTAGGATGGATATCAGCAGTGGTTTAGTGTAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - ataaacc
- - - - - - - caatgtg
- - - - - - - - - - - agaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactga