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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g52840.1 (Oryza sativa), 3'ss of exon 4
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                               |||  ||| ||||     |||  |||  ||    ||| ||     |  ||     |||  | | |   || |        | |  |||||     |     ||| |   || |  | | |    | |      ||     |  |  | | ||| |||||||| ||||| || || ||||||||||| ||||||||||| || || || ||||| || || ||||||||||
-----------------------------------------------gtacggttgattg-----cgttctatcggttgcctttgttcagattatttgggtgttaaaaatgtttaatctgaaagagaaat--cagtgcctgatg----ggagtgaatgatgtgaatttc--tggtggctctgggttttccttgcgtgcagATACATTGATATGGCCGAGTCATTGTGCCAGAAACGTGCTTTGGAGGCCTTCCGCTTGGACCCAGCGAAATGGGGAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 4
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatt-tagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                                                     ||| |       | ||| |||  |  || || |  | |  | |    |   | |    ||  |  ||||    |     || ||   |||      | ||  ||    |   ||     | ||   |  |||||  ||||| |||||||| |||||||| ||||| ||||||||||| || || || ||||| || || ||||||||||
---------------------------------------------------------------------gtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctga-----attggggtttttattctgtgtgttcttgg-tcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTCCGTTTGGACCCGGCGAAATGGGGAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 4
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaacctt--ttatc-tttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                   |  ||   | ||  | | |   || ||    | | | ||  | || |||  |||   |||    || | |  |    ||||| |||   ||            |  |    |||| |      ||  ||| | ||    | |  ||| | | ||  ||||  ||||||||| ||||||||||||||| |  | || || || ||||| ||||||||||||||||||||||| || ||||||||||
----------------------------------gtatgtcaaactttcactttcactttgtgtgtgcgcttttcatgatattttgtggaatttgaagccaataaatacagacatatatatagtgttgacattttgaatagtataattgggt------gtcggtattcaa----agattgtggatctttatttattatttcagGTATATTGACATGGCAGAAACACTATGTCAAAAACGTGCCTTGGAAGCATTTCGGTTGGATCCGGCTAAATGGGGAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 5
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                                                                               | |||    ||||  || || ||||| ||||  |||    | ||   |||| |     || |        |  || | |||| | ||      |||   ||||||||| ||||||||||| ||| |  | ||||| ||||||||  ||||||| ||| | |||||||| || ||||||||||
----------------------------------------------------------------------------------------------ctaatccaggagcacaatgatgtttatttagt-ggttggcattttggatcttat-----tcttcacagaatccaaattcgaaaaattgtggatctttccttttcagGTATATTGACATGGCTGAAACACTATGCCAAAAGCGTGCCCTGGAAGCGTTTAGATTGGATCCCGCTAAATGGGGAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 4
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                                                                             | | ||||   ||||  || || |  || || |  |||   || ||   | ||    |||        | | |  |   | ||| | ||      |||   ||||||||| ||||||||||| ||| |  ||||||| ||||||||  | ||||| ||| | |||||||| || ||||||||||
---------------------------------------------------------------------------------------------tctcatcaagaagcacaatgatgt--atataat-ggttggcgttttggatttt----attcttcaccgaattcaaattcaaaaaaattgtggatctttccttttcagGTATATTGACATGGCTGAAACACTGTGCCAAAAGCGTGCCCTAGAAGCTTTTAGATTGGATCCCGCTAAATGGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352768987|gb|FQ468178.1|FQ468178
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|27579405|gb|CB002100.1|CB002100
EST:     GGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: GGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     AACAAGTACAGCGAAGGATGTCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352767847|gb|FQ466056.1|FQ466056
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|46917672|gb|CN547001.1|CN547001
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|32250119|gb|CD715938.1|CD715938
EST:     GGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: GGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGA                         GTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT
genomic: AACAAGTACAGCGAAGGATATCCAGGCGCTAGATACTATGGAGGAAATGAgtaagaagat ... tatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG
                                        ccttttatctttc  CT-rich tract
                                          ttttatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaagatattaatttccttatcatgattttctttcgtggtatttgtaatgtttattggtcatcgtggtatttgtaatgtttattggtcattgttatcatttagcattatcatatttatgtagtcagttccagtgttcattcttttggatttcctggttagtactgaagtagaaagagtgaaaccttttatctttcagGTACATTGACATGGCAGAATCCTTGTGCCAGAAGCGTGCTTTGGAAGCATTTCGGTTGGATCCTGCAAAATGGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG