Sequence
atgc intronic sequence ATGC exonic sequence...aaatatatgagagttgttggctccatttaatttatgtgtattatttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 13
-----aaatatatgagagttgttggctccatt-taatttatgtgtattat---ttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
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atcaataaaagaaagcagtaatttatttcattctaaaggatcagtaaaatagactaatcttttttattattatta----tcattatttttaaaaaaat-----gtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCCATGGTTCCTGGTG
upper sequence: Vv00s0211g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 12
aaatatatgagagttgttggctccatt--taatttatgtgtattatttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
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-attatgtcagatcaataaaagaaagcagtgatttattt-cattctaaagggtcagtaaaataggctaatcttttttttttttttcttttaaaaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCCATGGTTCCTGGTG
upper sequence: Vv00s0211g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 12
aaatatatgagagttgttggctccatttaatttatgtgtattatttagcttttattataa--aaaggaagagccactatttcttatga--------ttttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
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-----catta----tgttggattcataaaagatagctgtaattttcatctaacagtaatattaaagtgagactaacgttcttttataaaaaaacaaaaatctctgt-cagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAGCTAACAAAAACACAGTTCCAGGAGATGTGTCCGCTATGGTTCCTGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
ttttctctgttc CT-rich tract
tttattataaaaagga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatatatgagagttgttggctccatttaatttatgtgtattatttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGTAGCTAACAAAAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aaatata
- - - - - - - - - -gctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa