1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgttcctacaactctctttctttcaattattatatttctctttatggatcctcttattttttctgccaaagagtgtcttagatgctctccttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTATTTCTTGATGTGGAACGTCCTAGTCCG
species | Vitis vinifera |
transcript | Vv00s0203g00040.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACEST: gi|27581899|gb|CB004594.1|CB004594
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATAC
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|33403462|gb|CF209089.1|CF209089
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|26267184|gb|CA818247.1|CA818247
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110712576|gb|EE090353.1|EE090353
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAAGTGAAAGGACCCATGGACTATGTACCTGAAATG TTTGATGAACTGAAAGATCAAGTGGCAGTEST: gi|32245411|gb|CD711230.1|CD711230
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGT
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|26265089|gb|CA816152.1|CA816152
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|30303167|gb|CB979961.1|CB979961
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110694278|gb|EE071243.1|EE071243
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: GACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|32245848|gb|CD711667.1|CD711667
genomic: GACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349816674|gb|FQ404921.1|FQ404921
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|352768798|gb|FQ468010.1|FQ468010
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|27582368|gb|CB005063.1|CB005063
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349817581|gb|FQ407371.1|FQ407371
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|32457525|gb|CD798699.1|CD798699
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110713187|gb|EE088888.1|EE088888
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AATCATGAGCCTAAAGGTGAAAGGACCAATGGGACTATGTAC-TGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTANAACAGATACTGCNGGTTGTAEST: gi|33403546|gb|CF209173.1|CF209173
genomic: AATCATGAGCCTAAAGGTGAAAGGACCAATGG-ACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110713517|gb|EE089505.1|EE089505
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349811199|gb|FQ406187.1|FQ406187
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAACTGAAAGATCAAGTGGGCAGTAGAGCAEST: gi|33407776|gb|CF213403.1|CF213403
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGG-CAGTAGAGCA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110374705|gb|EC939628.1|EC939628
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349827283|gb|FQ421556.1|FQ421556
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGGTGTAEST: gi|22011514|gb|BQ796548.1|BQ796548
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|352768232|gb|FQ469407.1|FQ469407
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110711188|gb|EE087431.1|EE087431
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTACGTACCTGAAATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAEST: gi|110360356|gb|EC923388.1|EC923388
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110711976|gb|EE089073.1|EE089073
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: ATCATGAGCCCTAA-GGTGAAAAGGAC-AATGGACTATGTACCTGANATG TTTGATGAGCTGAAA-ATCAGGTGGCAEST: gi|349815417|gb|FQ400572.1|FQ400572
genomic: ATCATGAGCC-TAAAGGTGAAA-GGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACTTGAAATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAEST: gi|351053953|gb|FQ441719.1|FQ441719
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGA
EST: AAATCATGAGCCTAAAGGTGAAATGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCACGTGGCAGTAAAGCAGAEST: gi|351033212|gb|FQ461984.1|FQ461984
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349822581|gb|FQ412845.1|FQ412845
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|351028494|gb|FQ444775.1|FQ444775
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGEST: gi|30323727|gb|CD006989.1|CD006989
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGG
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110370543|gb|EC929968.1|EC929968
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|349812778|gb|FQ410420.1|FQ410420
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110711176|gb|EE087405.1|EE087405
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCNATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAAAGCAGATACTGCGGGTTGTAEST: gi|110383168|gb|EC947523.1|EC947523
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTAEST: gi|110720458|gb|EE096400.1|EE096400
genomic: AAATCATGAGCCTAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
EST: AATCATGAGCCCTAAAG-TGAAAGGACCAATGGACTATGTACCTGAAATG TTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
genomic: AATCATGAGCC-TAAAGGTGAAAGGACCAATGGACTATGTACCTGAGATGgtatgttgcg ... cttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTA
tggatcctcttattttttctgccaaagagtgtcttagatgctctccttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTATTTCTTGATGTGGAACGTCCTAGTCCG
ctctccttgtt CT-rich tract
tcttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcctacaactctctttctttcaattattatatttctctttatggatcctcttattttttctgccaaagagtgtcttagatgctctccttgttgcagTTTGATGAGCTGAAAGATCAGGTGGCAGTAGAGCAGATACTGCGGGTTGTATTTCTTGATGTGGAACGTCCTAGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -cctacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctctc