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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttggatgtggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGG

Basic information

species Vitis vinifera
transcript Vv00s0199g00240.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 5
gtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattc-----aattaatttgtttgg-atgtggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGG
||||       ||   ||    | |   |||   |    | |  || ||  |  | | ||  | | |||  ||| | | | | | |||     ||| |||   |     || ||| | | |||  |||||||| |||||||||||||| |||||||||||||| || |||||  |  |||||||||||||||| |||||| | ||   ||||||||| || | | || 
gtaatctcacgcttccctccttgctgattttggtctaaat-atcatttgatttaactaaagatatattgcaaatctattgaacttttcttcttaatgaatgcttacaatatttggatttcatttgcagCTGTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGCCTATTAGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGA

upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 6
gtaagtg---ggttctgttcttgcgg--ttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaatttgtttgg-atgtggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAA---GTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGG
||||      | |||  | ||||| |  || || |  ||   |     ||| |  | |  | || |    | |||  |  |||       || ||| ||| | |     ||  || | | |||  |||||||| |||||||||||||| |||||||||||||| || ||||   |  |  | |||||||||||||| |||||| | ||   ||||||||| || | |    
gtaatctcacgcttccctccttgctgatttttggtcgaaatatcatttgattta-agatctatagttgaatctgatgaacttttcttccttttaatgaatgtttacaatattgggatttcatttgcagCTGTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGAAGCCTATTGGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATT---

upper sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 5
gtaagtgggttctgttcttgcggttctgtttaaacagtttcaagatatgcatacatttaatcttttttgagaatatttaggaatattcaattaat-ttgtttggatgtggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGG
||||     || |   ||    | |   |||          | |||     || |  ||   | | | |   |||  |     |    ||| | | ||   |  ||  |||| | |||  |||||||| || ||||| || || ||||||||||||||||| |||||  || | ||||||||||| || |||||| | ||   ||| ||||   | ||| |||
gtaatctcattttcccctccttgctgattttggtgtaacagatgattcatctaaaggtacaatctgtagcacataagttcttcttcctaatgactcttaaatatattgggctttcatttgcagCTGTCTAGAAAAGTAGTGCAGAATATTCATCTTTCTGGTGGAAGCCTGTTGGGAGTTTCACGAGGAGGACCTGGAGTCAGTGATATTGCGAACAGTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaatatttaggaatattcaattaatttgtttggatgtggctctgattatcagCTGTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCTAGTGTTGCTGAAATTGTTGATAGTATGG
     atatttaggaatattc  TA-rich tract