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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttcccttcttttataccctatttgagtaattctttattttttggagcttaacacagttaatctgatagagtgggatttttttttttttatggtaattctttttattcattttttggtttgtttttttccctgctgttttcttttaatcacagACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAG

Basic information

species Vitis vinifera
transcript Vv00s0189g00030.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM5G865576_T01 (Zea mays), 3'ss of exon 6
gtttttttcccttcttttataccctatttgagtaattctttattttttggagcttaaca-cagttaatctgatagagtgggatttttttttttttatggtaattctttttattcattttttggtttgtttttttccctgctgttttcttttaatcacagACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAG
                                    ||  ||||  ||    |||   | |  || ||  | || | | | |  |            |         |  ||    |||  |   | ||  ||                |||||  ||||| |||||||| ||||| ||||||||| |||| || || || || ||||| ||||||||||||||  | | ||| ||||| || || || |||||||
-----------------------------------gtccatattcatttatactttttatccatttattggctaaatttgaaact------------gaagcccaaataaatgtgctttgggaaatattcattgattgtggaggaaaaattaattgcagACAGCAAATCTTGATGGGGAAACAAATCTGAAAATAAGGAAGGCTTTGGAGAAGACTTGGGACTATGTAATTCCTGAAAAGGCTTCTGAGTTCAAAG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 6
gtttttttcccttcttttataccctatttgagtaattctttattttttggagcttaacacagttaatctgatagagtgggatttttttttttttatggtaattctttttat-tcattttttggtttgtttttttccctgctgttttcttttaatcacagACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAG
                                                                  | || ||   |   |||||   | |  ||||    ||   || || |  |||  | || | |    ||   |    ||   | |   | ||||||||| ||| ||||||| ||||| ||||||||||| || |||||||||||||| |||||||| ||| |||||||||| || || || || || ||||
-----------------------------------------------------------------gtttgttatt-tataattttcaatctggtatgagtgtttccttgatattctttaatagtgtatgcagtttattaacattgggtctgggtgacagACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAGTTTAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttattcattttttggtttgtttttttccctgctgttttcttttaatcacagACTGCAAATCTGGATGGTGAAACAAATTTGAAGATCAGAAAAGCATTGGAAAAGACTTGGGACTACTTGACTCCAGAAAAAGCCTCAGAATTCAAAG
                                           ttttaat  putative branch site (score: 3)
           ttttttggtttgtttt  CT-rich tract
                                    tgttttcttttaat  TA-rich tract