1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattagaggggcacttgtagcaggcacaggctgtattgaggaccttggttatattcatgtttatttatttatctttccaatttttttgggcataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTGGATTCTCACATAAGTGATGGGGAATATGTCCTGAAGAAACCAGTTCTT
species | Vitis vinifera |
transcript | Vv00s0187g00320.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTG GCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTEST: gi|110415320|gb|EC981215.1|EC981215
genomic: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTGgttagttact ... cataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGT
EST: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTG GCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTEST: gi|83275584|gb|DV939592.1|DV939592
genomic: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTGgttagttact ... cataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGT
EST: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTG GCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTEST: gi|110423157|gb|EC989496.1|EC989496
genomic: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTGgttagttact ... cataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGT
EST: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTG GCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGT
genomic: GCAATTGATGATATTGATTTTGCTTCAGTTCATGCATATCCTGACAGCTGgttagttact ... cataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGT
tggttatattcatgtttatttatttatctttccaatttttttgggcataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTGGATTCTCACATAAGTGATGGGGAATATGTCCTGAAGAAACCAGTTCTT
atattcatgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattagaggggcacttgtagcaggcacaggctgtattgaggaccttggttatattcatgtttatttatttatctttccaatttttttgggcataatatagGCTCCCAGATGCTGATTTGGAAGAGAAAGCAAATTTTCTTTCACATTGGGTGGATTCTCACATAAGTGATGGGGAATATGTCCTGAAGAAACCAGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - gcacttg
- - - - - - - - - - - - cacaggc
- - - - - - - - - - - - - - - - - - - - gaccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt