1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctgtttatttttttgggtggcagcctatttttatttagaaattccagttagtgaaaaaagttcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCAC
species | Vitis vinifera |
transcript | Vv00s0187g00240.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAG GATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTCEST: gi|351021756|gb|FQ437141.1|FQ437141
genomic: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAGgtgggtataa ... tcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTC
EST: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAG GATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTCEST: gi|351028427|gb|FQ427323.1|FQ427323
genomic: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAGgtgggtataa ... tcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTC
EST: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAG GATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTC
genomic: AAGAGGCCCTAAGGCGTGTTTGGGAGTACATAAAGGTCAACCAATTAGAGgtgggtataa ... tcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTC
cagttagtgaaaaaagttcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCAC
tcactttt CT-rich tract
aaaaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttatttttttgggtggcagcctatttttatttagaaattccagttagtgaaaaaagttcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCAATGGCAATACTATGTGATGCAAAGCTTCGGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - tgggtgg
- - - - - - - - - - -cagccta
- - - - - - - - - - - - - - - - - - -agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttt