Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcacttttccgtataattgtttatatcaacattatttttttgataggcaagtttatatcaacattattagaatctgaatctgttatttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG

Basic information

species Vitis vinifera
transcript Vv00s0187g00220.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G08370.1 (Glycine max), 3'ss of exon 2
cttcacttttccgtataattgtttatatcaacattatttttttgataggcaagtttatatcaacatta----ttagaatctgaatctgtt----atttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
         | | | |  |   ||||   |    | |  ||   | |  |  |  |  || |   |||    |||     ||||  ||||    | |||  | | ||||||||||||| || || ||||| ||||||||| | || ||| |||| |||||||| ||  | ||||| ||||||||||||||||||||||||||||| | 
-------catacatgtgttgacttatgatagtcatctgcttggcacaaccttggattcattacttttactatttacctcttgaaaatgtttaaaactttcatgcacaGCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGGAATAGACCTTAGCACCGTAGATGTTAGCTATGTCAGCAGTCGCTCTT-

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G44410.1 (Glycine max), 3'ss of exon 5
cttcacttttccgtataat-tgttta--tatcaacattatttttttgatagg---caagtttatatcaac--attattagaatct---gaatctgttatttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
           || ||||  || | |  ||| |   | || |  |||  |         || ||  | |   ||||||    |||    ||| | |||   |||    ||||||||||||| || || ||||| ||||||||| | || ||| |||| || ||||| ||  | ||||| ||||||||||||||||||||||||||||| ||
-----------cgcataaagtgctgacttatgatagtcatctgcttggcatagcttggattcattactatttattatttacctcttgaaaatgttttaaactttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTG

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------------------------------cttcacttttccgtataattgtttatatc-----aac------attatttttttgataggcaagtttatatcaacattattagaatctgaatctgttatttttttccc-cagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
                                                                           |  |  |  | || | | || ||  |||     |||      ||| |||   |||||  | | ||| | |  |  |   ||| |||| |  ||  | | ||| ||   ||||||| ||||| || ||  |||||||||||||  | || |||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||| || ||
gtttatttcctaaacaaagtgttttgcaattatttttcttggttacttcataaacagcaatcatgtatttgattttataactggctgtttcactgctttcatctgagaaaccagttaattgtttccatgatactctaatttttttataattccatagcatctaaggcttctttgtttatcttgcagCCAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTTACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTG

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ16947 (Selaginella moellendorffii), 3'ss of exon 4
cttcacttttccgtataattgtttatatcaacattatttttttgataggcaagtttatatcaacattattagaatctgaatctgttatttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
                                                   | |||||| || | ||  |    |||  |  ||     |||  |  ||||||| || ||||||||  | || || || || ||    ||||| ||||||||||| || |||||| | || ||||| |||||||||||||| || |||||
----------------------------------------------gtaatactttataccagcctttct----tctttaagtgcatcgtttgcctgcagCCAAAATTCCTTTCCCGCTCACGCAAAGATTCCGAGGGATGTTGCAAAATGGAATCGACTTGAGCTCGGTGGATGTGAGCTATGTCAGCAGCCGTTCATG

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ16068 (Selaginella moellendorffii), 3'ss of exon 4
cttcacttttccgtataattgtttatatcaacattatttttttgataggcaagtttatatcaacattattagaatctgaatctgttatttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
                                             ||      ||||||  | | ||  |    |||  |  ||     |||  |  ||||||| || ||||||||  | || || || || ||    ||||| ||||||||||| || |||||| | || ||||| |||||||||||||| || |||||
--------------------------------------------gtaatactttttatacaagcctttct----tctttacgtgcatcgtttgcctgcagCCAAAATTCCTTTCCCGCTCACGCAAAGATTCCGAGGGATGTTGCAAAATGGAATCGACTTGAGCTCGGTGGATGTGAGCTATGTCAGCAGCCGTTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77588076|gb|DV223250.1|DV223250
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|51051352|gb|CO819013.1|CO819013
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77586760|gb|DV222522.1|DV222522
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34321024|gb|CF373778.1|CF373778
EST:     TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|28961834|gb|CB340921.1|CB340921
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110726655|gb|EE102627.1|EE102627
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110685864|gb|EE062959.1|EE062959
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|29783362|gb|CB349482.2|CB349482
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTCACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77577964|gb|DV217740.1|DV217740
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71881457|gb|DT030512.1|DT030512
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110701548|gb|EE079248.1|EE079248
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257347|gb|CA808410.1|CA808410
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110383463|gb|EC947838.1|EC947838
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34542613|gb|CF510845.1|CF510845
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110396217|gb|EC961898.1|EC961898
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71873805|gb|DT022860.1|DT022860
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110371370|gb|EC935343.1|EC935343
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34549179|gb|CF517411.1|CF517411
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875866|gb|DT024921.1|DT024921
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110701549|gb|EE079249.1|EE079249
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|27585127|gb|CB007822.1|CB007822
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGAAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352790841|gb|FQ475478.1|FQ475478
EST:     TTCTCTGGATTTGTAGCAG                         CCAAG-TTCCTTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAAT
genomic: TTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACC-TTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAAT
EST: gi|71867954|gb|DT017009.1|DT017009
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|294964063|gb|GW837866.1|GW837866
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77577299|gb|DV217363.1|DV217363
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|22009765|gb|BQ794799.1|BQ794799
EST:     ACTCTTACTTTTGCTTGGGNTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352794704|gb|FQ475202.1|FQ475202
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71873978|gb|DT023033.1|DT023033
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71874611|gb|DT023666.1|DT023666
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875857|gb|DT024912.1|DT024912
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110712770|gb|EE088107.1|EE088107
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71868316|gb|DT017371.1|DT017371
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCT-TGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34542700|gb|CF510932.1|CF510932
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|33406423|gb|CF212050.1|CF212050
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26258038|gb|CA809101.1|CA809101
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGGGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110729230|gb|EE105337.1|EE105337
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77584920|gb|DV221543.1|DV221543
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352781978|gb|FQ469276.1|FQ469276
EST:     TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTGGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26258231|gb|CA809294.1|CA809294
EST:     CTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCCTCCATGTTACAAAAT
genomic: CTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCG-CTCCATGTTACAAAAT
EST: gi|28961974|gb|CB341013.1|CB341013
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110702874|gb|EE079227.1|EE079227
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77582909|gb|DV220445.1|DV220445
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|32245682|gb|CD711501.1|CD711501
EST:     GATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: GATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|33405791|gb|CF211418.1|CF211418
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71869568|gb|DT018623.1|DT018623
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110363258|gb|EC926834.1|EC926834
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71856647|gb|DT005702.1|DT005702
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|349830208|gb|FQ420468.1|FQ420468
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875634|gb|DT024689.1|DT024689
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257452|gb|CA808515.1|CA808515
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110381363|gb|EC946692.1|EC946692
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257101|gb|CA808164.1|CA808164
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGGGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110687779|gb|EE065579.1|EE065579
EST:     TTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: TTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26261832|gb|CA812895.1|CA812895
EST:     ACTCTTACTTTTCCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|351013193|gb|FQ424898.1|FQ424898
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|30124839|gb|CB910178.1|CB910178
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|351016605|gb|FQ424032.1|FQ424032
EST:     ATTTTTACTTTCGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcaagtttatatcaacattattagaatctgaatctgttatttttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATGGAATTGATTTGAGCACTGTAGATGTTAGCTATGTCAGCAGTCGCTCATG
                                   tctgttatttttttcc  CT-rich tract
        tttatatcaacattat  TA-rich tract