Sequence
atgc intronic sequence ATGC exonic sequence...tctgtttatttttttgggtggtagcctattattatttagaaattccagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCAGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0187g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G035325_T01 (Zea mays), 3'ss of exon 4
tctgtttatttttttgggtggtagcctattattatttagaaattccagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttag-
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------tttttcttgcagtcatgat-tatcat-gtgtatagtctctgagctgtgaaatttatgtcttaatgtacacac--atattaattgctatgtttggtaatgcgtagGATGTCATCAGTGGATCAATATTATGTGATTCAAAGCTTCAAGAGCTCTTTGGCTGTGAGAGTATTCCTATGTCAGGACTATCAGAAATGCTTGGTCACC
upper sequence: Vv00s0187g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G01230.1 (Glycine max), 3'ss of exon 4
---------tctgtttatttttttgggtggtagcctattattatttagaaattccagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCAGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCGC
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agattagggaatatttgttcttctcatt--taggaagttcttttcctggcgtt---attggtgtccataattgtttgatctacaat----tgctgcatattatttgtagGATCCTTTAAATTCAATGGTGATATTATGCGATGCAAAGCTTCAAGAGCTACTTGGATGTGAAAGCATTTCTGCTTTAGGAATACCAGAGATGTTAGCAC
upper sequence: Vv00s0187g00190.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G39530.1 (Glycine max), 3'ss of exon 4
-----tctgtttatttttttgggtggtagcctattattatttagaaattccagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCAGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCGC
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tagggaatatttgcccttctcattaaggaagttcttttcattgatattttcatggcatccataaattat-ttgatctacaat----tgctgcatgttatttgtagGATCCTTTAAATGCAATGGTGATATTATGTGATGCAAAGCTTCAAGAGCTACTTGGATGTGAAAGCATTTCTGCTTTAGGAATACCAGAGATGTTAGCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCAGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCGC
tcactttt CT-rich tract
tgaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgtttatttttttgggtggtagcctattattatttagaaattccagttagtgaaaaaagtgcattggcttttaaggtggttttgtttgtcacttttagGATCCTCTAAATTCGATGGCAATACTATGTGATGCAAAGCTTCAGGAGCTCTTTGGATGTGAAAGTATTTCTGCACTGGGGGTATCTGAGATGTTAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - tgggtgg
- - - - - - - - - - - - - - - - - - -agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg