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gtgctctgtaatatttattaatgaggagatagtattaattttgcttccagttacttcaaatatcttttagtttatactcaaattatttatagcaaccattgttttttaaattggtagtttaattacaatgcttgttgatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCTTTGGGATGCTGCTTCTGGTGAG
species | Vitis vinifera |
transcript | Vv00s0181g00120.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351039899|gb|FQ464937.1|FQ464937
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351018924|gb|FQ426423.1|FQ426423
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|33404273|gb|CF209900.1|CF209900
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351047461|gb|FQ454953.1|FQ454953
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351028547|gb|FQ444828.1|FQ444828
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351052700|gb|FQ453808.1|FQ453808
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|33404557|gb|CF210184.1|CF210184
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|352798434|gb|FQ480459.1|FQ480459
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|351024039|gb|FQ423462.1|FQ423462
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCEST: gi|349832306|gb|FQ420867.1|FQ420867
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
gcaaccattgttttttaaattggtagtttaattacaatgcttgttgatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCTTTGGGATGCTGCTTCTGGTGAG
tgttgat putative branch site (score: 4)
attgttttttaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctctgtaatatttattaatgaggagatagtattaattttgcttccagttacttcaaatatcttttagtttatactcaaattatttatagcaaccattgttttttaaattggtagtttaattacaatgcttgttgatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACCTTTGGGATGCTGCTTCTGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT